YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC24B10.10c
Organism:	Schizosaccharomyces pombe
Length:	355 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC24B10.10c.

Description	E-value	Query Range	Subject Range
CDC48_SOYBN - Cell division cycle protein 48 homolog OS=Glycine max GN=CDC48 PE=2 SV=1	255.0	[0..1]	[355..385]
gi\|215704352, gi... - gi\|215704711\|dbj\|BAG94339.1\| unnamed protein product [Oryza sativa Japonica Group], gi\|215704637\|dbj... gi\|125542437 - gi\|125542437\|gb\|EAY88576.1\| hypothetical protein OsI_10049 [Oryza sativa Indica Group]	255.0	[0..1]	[355..387]
CD48D_ARATH - Cell division control protein 48 homolog D OS=Arabidopsis thaliana GN=CDC48D PE=1 SV=1	253.0	[0..1]	[355..385]
gi\|98962497 - gi\|98962497\|gb\|ABF59516.1\| putative spindle disassembly related protein CDC48 [Nicotiana tabacum]	253.0	[0..1]	[355..385]
gi\|134091285, gi... - gi\|50255696\|gb\|EAL18428.1\| hypothetical protein CNBJ0700 [Cryptococcus neoformans var. neoformans B-... gi\|57229614, gi\|... - gi\|58260308\|ref\|XP_567564.1\| MMS2 [Cryptococcus neoformans var. neoformans JEC21], gi\|57229614\|gb\|AA...	253.0	[0..1]	[355..383]
gi\|56474515, gi\|... - gi\|67484218\|ref\|XP_657329.1\| cell division cycle protein 48 [Entamoeba histolytica HM-1:IMSS], gi\|56...	252.0	[0..1]	[355..369]
gi\|116000599 - gi\|116000599\|emb\|CAL50279.1\| putative transitional endoplasmic reticulum ATPase (ISS) [Ostreococcus ...	250.0	[0..1]	[355..421]

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Predicted Domain #1

Region A:
Residues: [1-355]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPTTKRAIK EIVVYALAFG CSWYAAHKLL STLDPYRQKR QDTVSKSRKR LDEWAGEQVK  60
   61 ELETLELNEY EQIVASQLVL PSEIDVSFDD IGGMDEHVNQ LLQDVLFPLK YPEVFDTHGG 120
  121 LLSCPKGLLL YGPPGCGKTM LAKALAKQSQ ATFINVSVGL LTDKWFGESN KLVDALFTLA 180
  181 RKLEPTIIFI DEIDTFLRQR QRTDHEAMAQ IKAEFMSMWD GLLSGQSRVL VLGATNRPAD 240
  241 IDEAIRRRMP KVFSIPLPNA EQRRKILELY LKKVPLEANF DWNGVVNATA GLSGSYIKEV 300
  301 CRSALSVPRR ELFDKHGNDL EAIKYDIQSG GLRSLKTEDF YHYESLQNVS GIDVE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	63.522879
Match:	1oz4A
Description:	VCP/p97
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits