YRC Public Data Repository - Protein Structure Prediction

Protein:	sec66
Organism:	Schizosaccharomyces pombe
Length:	192 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sec66.

Description	E-value	Query Range	Subject Range
gi\|39944860, gi\|... - gi\|39944860\|ref\|XP_361967.1\| hypothetical protein MG04412.4 [Magnaporthe grisea 70-15], gb\|EAA50653....	256.0	[0..2]	[171..7]
gi\|85118487 - gi\|85118487\|ref\|XP_965454.1\| hypothetical protein NCU02681 [Neurospora crassa OR74A] gi\|32422873, gi\|... - gi\|38567197\|emb\|CAE76490.1\| related to endoplasmic reticulum translocation complex chain SEC66 [Neur...	252.0	[0..4]	[171..9]
gi\|49087242, gi\|... - gi\|67521970\|ref\|XP_659046.1\| hypothetical protein AN1442.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	246.0	[0..2]	[171..5]
gi\|46098758, gi\|... - gi\|71017499\|ref\|XP_758980.1\| hypothetical protein UM02833.1 [Ustilago maydis 521], ref\|XP_400448.1\| ...	243.0	[0..2]	[165..3]
gi\|42544755, gi\|... - gi\|46108666\|ref\|XP_381391.1\| hypothetical protein FG01215.1 [Gibberella zeae PH-1], gi\|42544755\|gb\|E...	243.0	[0..6]	[171..10]
gi\|116207072, gi... - gi\|88183426\|gb\|EAQ90894.1\| hypothetical protein CHGG_02829 [Chaetomium globosum CBS 148.51], gi\|1162...	239.0	[0..4]	[171..9]
gi\|44986160 - gi\|44986160\|gb\|AAS54700.1\| AGR210Cp [Ashbya gossypii ATCC 10895] gi\|44986160, gi\|... - gi\|45201306\|ref\|NP_986876.1\| AGR210Cp [Ashbya gossypii ATCC 10895], gi\|44986160\|gb\|AAS54700.1\| AGR21...	235.0	[0..2]	[170..26]
gi\|169784400 - gi\|169784400\|ref\|XP_001826661.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|238508469, gi... - gi\|238508469\|ref\|XP_002385427.1\| translocation protein (Sec66), putative [Aspergillus flavus NRRL335... gi\|83775408 - gi\|83775408\|dbj\|BAE65528.1\| unnamed protein product [Aspergillus oryzae]	230.0	[0..2]	[171..5]
gi\|159123761 - gi\|159123761\|gb\|EDP48880.1\| translocation protein (Sec66), putative [Aspergillus fumigatus A1163] gi\|70983412, gi\|... - gi\|70983412\|ref\|XP_747233.1\| translocation protein (Sec66) [Aspergillus fumigatus Af293], gi\|6684485...	227.0	[0..2]	[171..5]
SEC66 - Non-essential subunit of Sec63 complex (Sec63p, Sec62p, Sec66p and Sec72p); with Sec61 complex, Kar2... gi\|151946561 - gi\|151946561\|gb\|EDN64783.1\| Sec63 complex subunit [Saccharomyces cerevisiae YJM789] gi\|190408676 - gi\|190408676\|gb\|EDV11941.1\| glycoprotein complexed with Sec62p and Sec63p in the Sec63 complex [Sacc... SEC66_YEAST - Translocation protein SEC66 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEC66 PE=1 S...	226.0	[0..2]	[170..28]

Back

Predicted Domain #1

Region A:
Residues: [1-192]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSIYVPLIY ITILMGSMYG VSRFVRKSKN QESKPVSEEW FGENYSRNIF FSLLQQNPPA  60
   61 EDTLLKAALV LRATEGLRRL MKLKVSRMAL NNLLNRGGVG DELIRKFGRL EKETELELMD 120
  121 IAKTANSLQP GWNQFIFQTC NEIIENEKIH SIIDNIPKDI DSISQRWQTE KILYEAADEE 180
  181 LRIQAQKELG VL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits