YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC1393.02c
Organism:	Schizosaccharomyces pombe
Length:	406 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC1393.02c.

Description	E-value	Query Range	Subject Range
gi\|7549210 - gi\|7549210\|gb\|AAF63787.1\|AF142406_1 200 kDa antigen p200 [Babesia bigemina]	225.0	[0..1]	[406..191]
gi\|62360137, gi\|... - gi\|70801193\|gb\|AAZ11101.1\| hypothetical protein, conserved [Trypanosoma brucei], gi\|62360137\|gb\|AAX8... gi\|71753647, gi\|... - gi\|72388472\|ref\|XP_844660.1\| hypothetical protein [Trypanosoma brucei TREU927], gi\|71753647\|ref\|XP_8...	156.0	[0..8]	[404..529]
gi\|9916, gi\|627059 - gi\|9916\|emb\|CAA39663.1\| liver stage antigen [Plasmodium falciparum], pir\|\|A45592 liver stage antigen...	155.0	[0..7]	[406..1220]
gi\|124802937, gi... - gi\|23508159\|ref\|NP_700829.1\| liver stage antigen, putative [Plasmodium falciparum 3D7], gi\|23495223\|...	148.0	[0..7]	[406..584]
gi\|118352773 - gi\|118352773\|ref\|XP_001009657.1\| hypothetical protein TTHERM_00155290 [Tetrahymena thermophila] gi\|118352773, gi... - gi\|89291424\|gb\|EAR89412.1\| hypothetical protein TTHERM_00155290 [Tetrahymena thermophila SB210], gi\|...	148.0	[0..8]	[402..539]
gi\|70883026 - gi\|70883026\|gb\|EAN95962.1\| hypothetical protein, conserved [Trypanosoma cruzi] gi\|71661587 - gi\|71661587\|ref\|XP_817813.1\| hypothetical protein [Trypanosoma cruzi strain CL Brener]	144.0	[0..2]	[405..123]
gi\|70799929, gi\|... - gi\|73544167\|ref\|XP_847978.1\| kinetoplast-associated protein-like protein [Leishmania major strain Fr...	143.0	[0..2]	[405..267]
gi\|89348180 - gi\|89348180\|gb\|ABD72216.1\| CTTNBP2 [Homo sapiens]	142.0	[0..1]	[305..115]
gi\|85111555 - gi\|85111555\|ref\|XP_963992.1\| hypothetical protein [Neurospora crassa OR74A] gi\|32419136, gi\|... - gi\|32419136\|ref\|XP_330046.1\| hypothetical protein [Neurospora crassa], gi\|28925749\|gb\|EAA34756.1\| hy...	141.0	[0..8]	[393..1497]
gi\|38566922 - gi\|38566922\|emb\|CAE76225.1\| related to putative cytoplasmic structural protein [Neurospora crassa]	141.0	[0..8]	[393..1574]

Back

Predicted Domain #1

Region A:
Residues: [1-406]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGTPSFQKL MALADSQSAQ AAVQIEQLRK AQIREKAREI TEERNRQRKL QRERELRQKY  60
   61 EEEQRRQQAM EAKRIAASTR QTSERPPLSA EEAKRIREVK EKDRLESKKN ERQGKPRSYN 120
  121 ELLRQASSAP AVNETSSSGL LQSKDKRSQS PHSPKKPVKN SSSRDQPVRN SGATSTASLP 180
  181 PAGLRAGRGS QISASLAWLK TGGASAAPSN PRQPPPTSNF SNRKARYASN GLVQLQTGPK 240
  241 RDKRSAGEVQ DEIMKRRQNS SISQAATPRT VSNSETSYVG SPALKQSKPN SLKSNNTSRK 300
  301 TSASSAITKP KARPHTSRHD EFVVSDDDEL NDRVPDVSSE IWKIFGKRKQ DYVSRDVFSD 360
  361 EDDMEATGHD VWREEQAAAR AARLEDELEE QRERERELAK KRRKNK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.522879
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits