YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC26H5.07c
Organism:	Schizosaccharomyces pombe
Length:	505 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC26H5.07c.

Description	E-value	Query Range	Subject Range
gi\|85079712 - gi\|85079712\|ref\|XP_956405.1\| hypothetical protein NCU00182 [Neurospora crassa OR74A] gi\|32403310, gi\|... - gi\|32403310\|ref\|XP_322268.1\| hypothetical protein [Neurospora crassa], gi\|28917468\|gb\|EAA27169.1\| hy...	490.0	[0..5]	[463..3]
gi\|46122053, gi\|... - gi\|46122053\|ref\|XP_385580.1\| hypothetical protein FG05404.1 [Gibberella zeae PH-1], gi\|42550994\|gb\|E...	477.0	[0..1]	[500..1]
gi\|39977031, gi\|... - gi\|39977031\|ref\|XP_369903.1\| hypothetical protein MG06418.4 [Magnaporthe grisea 70-15], gb\|EAA56447....	455.0	[0..20]	[476..20]
gi\|42568843 - gi\|42568843\|ref\|NP_178217.3\| unknown protein [Arabidopsis thaliana]	454.0	[0..4]	[480..9]
PTM1_YEAST - Membrane protein PTM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PTM1 PE=1 SV=2 PTM1 - Protein of unknown function, copurifies with late Golgi vesicles containing the v-SNARE Tlg2p gi\|207343479 - gi\|207343479\|gb\|EDZ70928.1\| YKL039Wp-like protein [Saccharomyces cerevisiae AWRI1631]	446.0	[0..9]	[495..11]
gi\|114195292, gi... - gi\|115387405\|ref\|XP_001211208.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	431.0	[0..12]	[474..8]
gi\|83772819 - gi\|83772819\|dbj\|BAE62947.1\| unnamed protein product [Aspergillus oryzae] gi\|169779231 - gi\|169779231\|ref\|XP_001824080.1\| hypothetical protein [Aspergillus oryzae RIB40]	428.0	[0..4]	[498..1]
gi\|90298498, gi\|... - gi\|90298498\|gb\|EAS28129.1\| hypothetical protein CIMG_09333 [Coccidioides immitis RS], gi\|119174742\|r...	423.0	[0..9]	[480..4]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAILKSALVG FICFLHFFIV NASDNKSLLT EDIMASQVCN GMFAKKGKTS EITLKIDSYT  60
   61 SDFGGAIRLL IFNWKDVNAI GMEDDDGEKH YICNYEDIEA GVCKDDDYGL YLINQTAPHD 120
  121 SIYSAAVD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [129-505]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AESMVSPLKY PVEQSGLYCV FTAPLEGSSE AYKITVTWEN YFGNLDATDY PHLFLNPILL  60
   61 AINCLIGIWW SFIMFRYRHD LLQVQKYISG VVALSIVCTM VSTGYFYFAN SKGYTTGSKV 120
  121 FAFFLSLAQS ARQSYFGFLL LIVSLGYSIV VPSLGSLLRK CQILAGLQFV SSCFFLSSLF 180
  181 ISPSNKESLV ILFAAPVFLI TLFAMFLWIV LALNNTIRDL RIRKQTVKAQ MYTRLWIVIC 240
  241 FGIVAYASIV AANAILIGIY GQMNYYLKYW KLLWFLNYGY TDILVLILML TILYLWRPTE 300
  301 NNRRFAMSEQ VAQDVDEFEM TSSLSNDSLH LHHERPTSPA NPHIIHGSAD EHQALFAVDD 360
  361 ESDDDASTLA TSKQKPA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.28
Match:	1f88A
Description:	Rhodopsin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits