YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC16E9.09c
Organism:	Schizosaccharomyces pombe
Length:	215 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC16E9.09c.

Description	E-value	Query Range	Subject Range
gi\|109066641, gi... - gi\|109066643\|ref\|XP_001091631.1\| PREDICTED: similar to transmembrane emp24 protein transport domain ...	242.0	[0..5]	[215..15]
TMED9 - transmembrane emp24 protein transport domain containing 9	236.0	[0..7]	[215..25]
gi\|149047669, gi... - gi\|27697481\|ref\|XP_223611.1\| PREDICTED: similar to transmembrane emp24 protein transport domain cont...	236.0	[0..5]	[215..15]
gi\|114613157 - gi\|114613157\|ref\|XP_001145929.1\| PREDICTED: transmembrane emp24 protein transport domain containing ...	235.0	[0..13]	[215..23]
TMED4_MOUSE - Transmembrane emp24 domain-containing protein 4 OS=Mus musculus GN=Tmed4 PE=1 SV=1	235.0	[0..7]	[215..17]
gi\|125852895, gi... - gi\|50344924\|ref\|NP_001002134.1\| transmembrane emp24 protein transport domain containing 4 [Danio rer...	235.0	[0..1]	[215..1]
gi\|54261696, gi\|... - gi\|89268685\|emb\|CAJ82691.1\| transmembrane emp24 protein tra [Xenopus tropicalis], gi\|58331996\|ref\|NP...	233.0	[0..1]	[215..1]
gi\|76615572 - gi\|76615572\|ref\|XP_585552.2\| PREDICTED: similar to Transmembrane emp24 protein transport domain cont...	231.0	[0..19]	[215..81]

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Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLGIFGLLL FTFFFQSQAV HFYFDGSKPK CFLKDMPKGM MVTGIVKAEQ WNNEANKWVT  60
   61 SNNIKIRVQV DETFANNHLI YKNDLRSNEA VRFTTTNEGT HRICYLSTSD GAWFSSTKTR 120
  121 LHVDLASDDK YNLIASSEDE AK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	12.075721
Match:	PF01105.15
Description:	No description for PF01105.15 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [143-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLTDRVAALN TRLESILGEQ MLQRSREMTF RDTSESANSR VVRWTIVQIV VLLVTCIWQL  60
   61 SHLQRFFVKE KLV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits