YRC Public Data Repository - Protein Structure Prediction

Protein:	mug82
Organism:	Schizosaccharomyces pombe
Length:	182 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mug82.

Description	E-value	Query Range	Subject Range
RF1_SACD2 - Peptide chain release factor 1 OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN...	210.0	[0..1]	[181..173]
gi\|68058123, gi\|... - gi\|68249924\|ref\|YP_249036.1\| peptide chain release factor 1 [Haemophilus influenzae 86-028NP], gi\|68...	208.0	[0..1]	[181..172]
gi\|46133404 - gi\|46133404\|ref\|ZP_00157143.2\| COG0216: Protein chain release factor A [Haemophilus influenzae R2866...	207.0	[0..1]	[181..171]
RF1_HAEIN - (P43917) Peptide chain release factor 1 (RF-1) gi\|148716243, gi... - gi\|148826083\|ref\|YP_001290836.1\| peptide chain release factor 1 [Haemophilus influenzae PittEE], gi\|... gi\|144982593, gi... - gi\|145642039\|ref\|ZP_01797610.1\| peptide chain release factor 1 [Haemophilus influenzae R3021], gi\|14... gi\|145637543, gi... - gi\|145637543\|ref\|ZP_01793200.1\| peptide chain release factor 1 [Haemophilus influenzae PittHH], gi\|1... gi\|145631803, gi... - gi\|145642039\|ref\|ZP_01797610.1\| peptide chain release factor 1 [Haemophilus influenzae R3021], gi\|14... gi\|16273461, gi\|... - gi\|16273461\|ref\|NP_439710.1\| peptide chain release factor 1 [Haemophilus influenzae Rd KW20], gi\|157... gi\|229809952, gi... - gi\|229847123\|ref\|ZP_04467228.1\| peptide chain release factor 1 [Haemophilus influenzae 7P49H1], gi\|2... gi\|229844233, gi... - gi\|229844233\|ref\|ZP_04464374.1\| peptide chain release factor 1 [Haemophilus influenzae 6P18H1], gi\|2...	206.0	[0..1]	[181..172]
RF1_HAEIN - Peptide chain release factor 1 OS=Haemophilus influenzae GN=prfA PE=3 SV=2 RF1_HAEIN - Peptide chain release factor 1 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)...	206.0	[0..1]	[181..171]
RF1_PASMU - Peptide chain release factor 1 OS=Pasteurella multocida (strain Pm70) GN=prfA PE=3 SV=1 RF1_PASMU - Peptide chain release factor 1 OS=Pasteurella multocida GN=prfA PE=3 SV=1	206.0	[0..1]	[181..171]
RF1_CARHZ - Peptide chain release factor 1 OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 ...	205.0	[0..1]	[181..170]
gi\|53732835 - gi\|53732835\|ref\|ZP_00155134.2\| COG0216: Protein chain release factor A [Haemophilus influenzae R2846...	205.0	[0..1]	[181..172]
RF1_HAHCH - Peptide chain release factor 1 OS=Hahella chejuensis (strain KCTC 2396) GN=prfA PE=3 SV=1	205.0	[0..1]	[181..173]
gi\|94427879, gi\|... - gi\|94500021\|ref\|ZP_01306556.1\| peptide chain release factor 1 [Oceanobacter sp. RED65], gi\|94427879\|...	205.0	[0..1]	[181..173]

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Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFANFRNCFK IKNSRLIYDN INKCLLTKEE TNQLLKFIHL KWKPAKDQVQ ISFSRSSGPG  60
   61 GQNVNKLNTK VIVNLPFKQL ESCIPMFLIN HFKTCEMLRN YRIQNGIKIY SQKTRSQHKN 120
  121 IEDALNKISD LLNKSAETLY VPDTPPEKIA RISILKKESN EKRLSEKKYK QKKKTQRRIT 180
  181 MD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.30103
Match:	2b3tB
Description:	Molecular basis for bacterial class 1 release factor methylation by PrmC
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits