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View Structure Prediction Details

Protein: SPBC947.08c
Organism: Schizosaccharomyces pombe
Length: 338 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC947.08c.

Description E-value Query
Range
Subject
Range
gi|77550353, gi|... - gi|77550353|gb|ABA93150.1| retrotransposon protein, putative, unclassified [Oryza sativa (japonica c...
185.0 [0..75] [329..331]
gi|116309113 - gi|116309113|emb|CAH66218.1| OSIGBa0157N01.4 [Oryza sativa (indica cultivar-group)]
158.0 [0..75] [325..207]

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Predicted Domain #1
Region A:
Residues: [1-99]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLSGDQRI ICLEIPLQGK ENVHINFAKE VEKLYGPSVQ ENSKKNDLSD SADSEGESTH  60
   61 VDEQQAANGA ADGTQTIKKK KRKRRYADEY YDRTDPFID

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [100-338]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DAELYIEEKA AATKDGFFVF SGPLVAEGDT VKIERSKKTK KKKKTSLSNA THPAPAVSAV  60
   61 VASADASFDD SRDIESEDEQ PLRTLSIEMA AKNALKEAKR ENAKVPKDVS KKEAKTTKSK 120
  121 EKATKKTSSS VPKQSTGENT KKAVKLETPL TSTPPIPPLS EPKHSPATVN EHISPPSALT 180
  181 NPSTEELKPS TSLPIDQGNA SVVSKPTQQV SIVLSQNASL PVDEHQAEPE KSIPTSSIP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle