YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC1347.09
Organism:	Schizosaccharomyces pombe
Length:	284 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1347.09.

Description	E-value	Query Range	Subject Range
gi\|111283020, gi... - gi\|111616094\|ref\|ZP_01403126.1\| Cyclopropane-fatty-acyl-phospholipid synthase:Methyltransferase type...	152.0	[0..5]	[277..415]
gi\|25300084 - pir\|\|AF3437 cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79) [imported] - Brucella melite... gi\|17983489, gi\|... - gi\|17987767\|ref\|NP_540401.1\| cyclopropane-fatty-acyl-phospholipid synthase [Brucella melitensis 16M]...	148.0	[0..9]	[280..121]
gi\|62289436, gi\|... - gi\|62289436\|ref\|YP_221229.1\| Cfa, cyclopropane-fatty-acyl-phospholipid synthase [Brucella abortus bv... gi\|82615463 - gi\|82615463\|emb\|CAJ10432.1\| SAM (and some other nucleotide) binding motif:Generic methyltransferase:... gi\|254716660 - gi\|254716660\|ref\|ZP_05178471.1\| cyclopropane-fatty-acyl-phospholipid synthase [Brucella ceti M13/05/... gi\|254729781 - gi\|254729781\|ref\|ZP_05188359.1\| cyclopropane-fatty-acyl-phospholipid synthase [Brucella abortus bv. ... gi\|82699362 - gi\|82699362\|ref\|YP_413936.1\| methyltransferase [Brucella melitensis biovar Abortus 2308] gi\|23347245, gi\|... - gi\|23501352\|ref\|NP_697479.1\| cyclopropane-fatty-acyl-phospholipid synthase [Brucella suis 1330], gi\|... gi\|189023686, gi... - gi\|189023686\|ref\|YP_001934454.1\| cyclopropane-fatty-acyl-phospholipid synthase [Brucella abortus S19... gi\|254688748 - gi\|254688748\|ref\|ZP_05152002.1\| cyclopropane-fatty-acyl-phospholipid synthase [Brucella abortus bv. ... gi\|254693231 - gi\|254693231\|ref\|ZP_05155059.1\| cyclopropane-fatty-acyl-phospholipid synthase [Brucella abortus bv. ... gi\|254703802 - gi\|254703802\|ref\|ZP_05165630.1\| cyclopropane-fatty-acyl-phospholipid synthase [Brucella suis bv. 3 s... gi\|254712986 - gi\|254712986\|ref\|ZP_05174797.1\| cyclopropane-fatty-acyl-phospholipid synthase [Brucella ceti M644/93... gi\|254696877 - gi\|254696877\|ref\|ZP_05158705.1\| cyclopropane-fatty-acyl-phospholipid synthase [Brucella abortus bv. ... gi\|163842731, gi... - gi\|163842731\|ref\|YP_001627135.1\| hypothetical protein BSUIS_A0477 [Brucella suis ATCC 23445], gi\|163... gi\|254701255 - gi\|254701255\|ref\|ZP_05163083.1\| cyclopropane-fatty-acyl-phospholipid synthase [Brucella suis bv. 5 s...	146.0	[0..9]	[280..106]
gi\|113732317, gi... - gi\|167648570\|ref\|YP_001686233.1\| cyclopropane-fatty-acyl-phospholipid synthase [Caulobacter sp. K31]...	145.0	[0..10]	[277..101]
gi\|121604357, gi... - gi\|84712397\|ref\|ZP_01020309.1\| cyclopropane-fatty-acyl-phospholipid synthase [Polaromonas naphthalen...	144.0	[0..8]	[279..121]
gi\|85671925, gi\|... - gi\|85702997\|ref\|ZP_01034101.1\| Cyclopropane-fatty-acyl-phospholipid synthase CfaS [Roseovarius sp. 2...	144.0	[0..5]	[281..134]
gi\|116251745, gi... - gi\|116251745\|ref\|YP_767583.1\| putative cyclopropane-fatty-acyl-phospholipid synthase [Rhizobium legu...	144.0	[0..5]	[279..89]
gi\|115423159, gi... - gi\|187478573\|ref\|YP_786597.1\| cyclopropane-fatty-acyl-phospholipid synthase [Bordetella avium 197N],...	143.0	[0..8]	[279..119]
gi\|107837176, gi... - gi\|108563403\|ref\|YP_627719.1\| cyclopropane fatty acid synthase [Helicobacter pylori HPAG1], gi\|10783...	143.0	[0..5]	[277..86]
gi\|48763032 - ref\|ZP_00267589.1\| COG2230: Cyclopropane fatty acid synthase and related methyltransferases [Rhodosp... gi\|83592064, gi\|... - gi\|83592064\|ref\|YP_425816.1\| cyclopropane-fatty-acyl-phospholipid synthase [Rhodospirillum rubrum AT...	142.0	[0..16]	[279..139]

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Predicted Domain #1

Region A:
Residues: [1-284]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDIVYANVS HYNKIEASKY DNPSTLAISK VISSKILQFE DNSETSLRHD LPKYDQDRLL  60
   61 LTSDDDLTNV NNFWKKSGMS ILDFACGTGL ISQHLFPYCK QIVGIDVSQD MVDVYNEKFR 120
  121 KMNIPKERAC AYVLSLDDLD GNGDEPFSTE FDAVVCSMAY HHIKDLQEVT NKLSKLLKPN 180
  181 GRLFVADLIK GGDTFHGNLH PDEIAKLGVA HHGGFTPQSI LNLFKNASLS NAEVIGKAQA 240
  241 NVWVDEAKYQ RSTQSKDAKT LDLANGEKLY EVKLQLMVIS GIKT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.09691
Match:	1kp9A
Description:	CmaA1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transferase activity	1.77671966857605	bayes_pls_golite062009
catalytic activity	1.25333584501255	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	0.612108481676679	bayes_pls_golite062009
methyltransferase activity	0.606225212585352	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	0.14147363365106	bayes_pls_golite062009
DNA binding	0.00720144044916005	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: