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View Structure Prediction Details

Protein: SPAC824.09c
Organism: Schizosaccharomyces pombe
Length: 320 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC824.09c.

Description E-value Query
Range
Subject
Range
gi|7268541, gi|7... - pir||T05075 hypothetical protein T6K21.70 - Arabidopsis thaliana, gi|7268541|emb|CAB78791.1| putativ...
180.0 [0..1] [308..1]
SMAP2_MOUSE - Stromal membrane-associated protein 2 OS=Mus musculus GN=Smap2 PE=1 SV=1
166.0 [0..1] [298..1]
gi|44980702 - gi|44980702|gb|AAS50607.1| ABL164Cp [Ashbya gossypii ATCC 10895]
gi|45185066, gi|... - gi|45185066|ref|NP_982783.1| ABL164Cp [Ashbya gossypii ATCC 10895], gi|44980702|gb|AAS50607.1| ABL16...
166.0 [0..4] [312..2]
gi|109477804, gi... - gi|109477804|ref|XP_001077851.1| PREDICTED: similar to centaurin, beta 5 [Rattus norvegicus], gi|109...
166.0 [0..5] [200..395]
CENTB5 - centaurin, beta 5
gi|168270666 - gi|168270666|dbj|BAG10126.1| centaurin-beta 5 [synthetic construct]
165.0 [0..11] [215..359]

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Predicted Domain #1
Region A:
Residues: [1-137]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINSKSKKKE SNALVLKSLL REPYNKVCAD CKRNEQPRWA SWNLGVFICI RCSGVHRSLG  60
   61 VHVSRVKSVD LDSWTDEQTE NMTRWGNERA NLYWEAKLAG GHVPSDSKIA TFIKTKYEFK 120
  121 KWVLYPEIPS PETLKPE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 35.221849
Match: 2iqjA
Description: No description for 2iqjA was found.

Predicted Domain #2
Region A:
Residues: [138-320]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QNTRPVSEVN ASLDLNTASR SSSAHSVKST SSATVTNVTS KKEAISATTS LAQSSPNLAS  60
   61 LSKQPSTVHA PSTRQRDLKS SILSLYASPR PQVSSSSITT NATYQNLPSP VSTSTTSSQP 120
  121 YGAFHQPATT GSSFVADKWK MPMFTSNVTS AQPSARASPV QSNSSRPRSS LDSKIINSHD 180
  181 VWK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle