| Protein: | efc25 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 987 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for efc25.
| Description | E-value | Query Range |
Subject Range |
|
|
608.0 | [0..277] | [986..411] |
|
|
605.0 | [0..277] | [986..418] |
|
|
603.0 | [0..277] | [986..417] |
|
|
578.0 | [0..276] | [986..443] |
|
|
576.0 | [0..277] | [986..348] |
|
|
536.0 | [0..277] | [986..441] |
|
|
528.0 | [0..277] | [986..447] |
|
|
524.0 | [0..276] | [986..444] |
|
|
505.0 | [0..277] | [986..365] |
|
|
491.0 | [0..277] | [986..386] |
|
Region A: Residues: [1-146] |
1 11 21 31 41 51
| | | | | |
1 MRRPNLDRLR LKSRQGFETS VSKPSTPSYS TYSLSPTFSD KSVLSPSTMS DSYALSSTYT 60
61 AGSSYQNGES DYFGSLPTPS SDKSSTSPFP YLKGSFDDRF SSTHSLTRQP SPRSPLTPLK 120
121 GNTRASPEIR YVSDFTPPSS PFEDMQ
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.343 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.334 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.315 | g.45.1 | Pyk2-associated protein beta ARF-GAP domain |
| View | Download | 0.311 | a.1.1 | Globin-like |
| View | Download | 0.285 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.267 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.260 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.237 | d.92.1 | Metalloproteases ("zincins"), catalytic domain |
| View | Download | 0.232 | d.77.1 | Ribosomal protein L5 |
| View | Download | 0.228 | a.24.3 | Cytochromes |
|
Region A: Residues: [147-331] |
1 11 21 31 41 51
| | | | | |
1 ASVHSLPLSG CSIGPVRTNH SSSLSNSSNS LLQTESSLRP NSSFVNSPFF PLPSSDDLFL 60
61 NDRVINLFLF YEKFSYLFTH LLSAIKSRDA LSIPSLVLSL QEELFNLCQQ TGTFYLLQHN 120
121 LLQNFEFENP IKLHFDKIIP YFSRLTVLTF SNRAFIFPDH TFPRLQQSAE DFLYHLQFFF 180
181 TLCAN
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [332-415] |
1 11 21 31 41 51
| | | | | |
1 NSLYLSRFCY YPSFVPNTPF GGKWTNNGLS AVSSAYRTRL LEPCLPELDK CVWFLLKNCD 60
61 EFIENFSDFA DEEYVFEICS TITS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [416-987] |
1 11 21 31 41 51
| | | | | |
1 HSEQIFNKLE SWDMSIYFDK DLSECEQATN FAVQSYFVTK QRCYDLLTDL VCSSQDLMME 60
61 HSNDFSTMPT MIASIAVAFQ TLFENVCDFL KVRAALVDEM QELATKEFEN KFSNANTAKD 120
121 DEPARQTNKG TTRISRSSDF TAVSEMSKDT LTLGRNSLQS ILMLDNLLTN KVVQSDNNVK 180
181 GGTLPALVHY LVQNVHLNKD FRHSFLLTYK TFTTPQELFT LLVILFHELP PPGLDATAYS 240
241 SWEKGDNFVT KKNVCTVMNL WVQKYFFEDL KARNTLYLIS EMRTFLRDHV VPSFHIGSVI 300
301 LSEIDNLWTE EPPDSLTQRL LSSPMATFIS LNVYAYTPEE FASQMTLLEF DYLKQIPSRE 360
361 WIFRSWVSRD SRSAVRNYIN FSNCFTYWII NCILEKKNTK ARTAVISFFI QTAYKCLSLQ 420
421 NFSTLMSIVS ALNSAPIYRL HAAYKLVKAE DIICLSGLRE IVETKKNFST YRALLRKAEL 480
481 PCVPFLGVIL SDLTFIDEGN PDVLDSSPHL LSFNKRHRLA DVVADVCRFQ SSSYEMQSNT 540
541 DLQSYILHRC RFVNQDLSYL FDKSLSLEPR SS
|
| Detection Method: | |
| Confidence: | 127.0 |
| Match: | 1xd4A |
| Description: | Crystal structure of the DH-PH-cat module of Son of Sevenless (SOS) |
Matching Structure (courtesy of the PDB): |
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