YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC11G11.03
Organism:	Schizosaccharomyces pombe
Length:	241 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC11G11.03.

Description	E-value	Query Range	Subject Range
RLA0_RANSY - 60S acidic ribosomal protein P0 OS=Rana sylvatica GN=RPLP0 PE=2 SV=1	235.0	[0..1]	[240..1]
gi\|45360787, gi\|... - gi\|45360787\|ref\|NP_989067.1\| acidic ribosomal phosphoprotein P0 [Xenopus (Silurana) tropicalis], gi\|...	231.0	[0..1]	[237..1]
gi\|27503344, gi\|... - gi\|27503344\|gb\|AAH42268.1\| Arbp-prov protein [Xenopus laevis], gi\|147904649\|ref\|NP_001080134.1\| acid...	227.0	[0..1]	[237..1]
gi\|114577027 - gi\|114577027\|ref\|XP_001168269.1\| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isofor...	221.0	[0..1]	[237..1]
gi\|73994703 - gi\|73994703\|ref\|XP_863045.1\| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isoform 10...	218.0	[0..1]	[237..1]
RLA0_CHICK - 60S acidic ribosomal protein P0 OS=Gallus gallus GN=RPLP0 PE=2 SV=1	218.0	[0..1]	[240..1]
RLA0_MOUSE - 60S acidic ribosomal protein P0 OS=Mus musculus GN=Rplp0 PE=1 SV=3	218.0	[0..1]	[237..1]
gi\|109149722 - gi\|109149722\|ref\|XP_001115939.1\| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E), parti...	216.0	[0..1]	[237..1]

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Predicted Domain #1

Region A:
Residues: [1-241]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKSRRSKVL TLAQTEKKGH EGKAALFSGV QQSLDSFDYM WIFDVTNMRN TYLKRIRDDW  60
   61 KGSRIFMGKT KVMAKALGHT PEEEHAENVS KLTKLLHGAV GLLFTNSKPD EVIGYFESFV 120
  121 QNDFARAGAV APFTHVIPAG PVYSRAGQIP VEDDILLTHT LEPQVRQLGM PTVLKNGVVT 180
  181 LLADFPLCTE GQQLDSRQTR LLKLFGITAA EFKVGLLGYY SKKGASVEFL QSAPGADEAM 240
  241 E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.39794
Match:	1jj2G
Description:	Ribosomal protein L10
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits