YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC1687.17c
Organism:	Schizosaccharomyces pombe
Length:	168 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC1687.17c.

Description	E-value	Query Range	Subject Range
gi\|50758070 - gi\|50758070\|ref\|XP_415746.1\| PREDICTED: similar to carcinoma related gene [Gallus gallus]	188.0	[0..5]	[167..128]
gi\|54639131, gi\|... - gi\|54639131\|gb\|EAL28533.1\| GA13336-PA [Drosophila pseudoobscura], gi\|125776769\|ref\|XP_001359387.1\| G...	169.0	[0..1]	[167..1]
gi\|72015515, gi\|... - gi\|72015515\|ref\|XP_786599.1\| PREDICTED: similar to Der1-like domain family, member 2 [Strongylocentr...	165.0	[0..1]	[167..3]
gi\|41053839, gi\|... - gi\|41053839\|ref\|NP_957197.1\| Der1-like domain family, member 3 [Danio rerio], gi\|40352706\|gb\|AAH6466...	163.0	[0..2]	[167..3]
gi\|89269041, gi\|... - gi\|89269041\|emb\|CAJ81565.1\| Der1-like domain family, member 3derlin-3 [Xenopus tropicalis], gi\|62859...	156.0	[0..5]	[167..7]
gi\|73995872 - gi\|73995872\|ref\|XP_543532.2\| PREDICTED: similar to Derlin-3 (Der1-like protein 3) (DERtrin 3) [Canis...	155.0	[0..18]	[167..231]
gi\|114665974 - gi\|114665974\|ref\|XP_511992.2\| PREDICTED: hypothetical protein isoform 5 [Pan troglodytes] ENSCJAT00000022013 - null gi\|168278134 - gi\|168278134\|dbj\|BAG11045.1\| derlin-2 [synthetic construct] gi\|109112945 - gi\|109112945\|ref\|XP_001101490.1\| PREDICTED: similar to Der1-like domain family, member 2 [Macaca mul... DERL2 - Der1-like domain family, member 2 gi\|73955289 - gi\|73955289\|ref\|XP_848354.1\| PREDICTED: similar to Der1-like domain family, member 2 isoform 1 [Cani... tr\|G1SMK6\|G1SMK6... - pep:novel chromosome:oryCun2:19:12909437:12922849:-1 gene:ENSOCUG00000004811 transcript:ENSOCUT00000... gi\|194675605 - gi\|194675605\|ref\|XP_001789969.1\| PREDICTED: Der1-like domain family, member 2 [Bos taurus] DERL2_PONAB - Derlin-2 OS=Pongo abelii GN=DERL2 PE=2 SV=1 DERL2_PONPY - Derlin-2 - Pongo pygmaeus (Orangutan)	154.0	[0..3]	[167..5]
DERL2_MOUSE - Derlin-2 OS=Mus musculus GN=Derl2 PE=1 SV=2 gi\|149053255, gi... - gi\|149053255\|gb\|EDM05072.1\| rCG34415, isoform CRA_c [Rattus norvegicus], gi\|109491204\|ref\|XP_0010799...	154.0	[0..3]	[167..5]

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Predicted Domain #1

Region A:
Residues: [1-168]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAILPEFISQ TPPVTRYIVL GTLFTTLAVY WRAITTFLYV GPFGLELILY LSFLLRFMSM  60
   61 LERSSPPPQT QSFLKTVLIV WFSLLVTSYF SYMPFAASYF SFTMLYIWSW KHPLYRISIL 120
  121 GLFDVKAPYV PWVMVLLRWL RTGIFPLLDL ISALIGHVYF FVTDFSTV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.221849
Match:	2nr9A
Description:	No description for 2nr9A was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.545407789079971	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: