YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC1827.03c
Organism:	Schizosaccharomyces pombe
Length:	512 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC1827.03c.

Description	E-value	Query Range	Subject Range
gi\|56419203, gi\|... - gi\|56419203\|ref\|YP_146521.1\| acyl-CoA synthetase [Geobacillus kaustophilus HTA426], gi\|56379045\|dbj\|...	494.0	[0..4]	[506..5]
gi\|52079510, gi\|... - gi\|52784875\|ref\|YP_090704.1\| acyl-CoA synthetase [Bacillus licheniformis ATCC 14580], gi\|52347377\|gb...	477.0	[0..6]	[508..7]
gi\|55981432, gi\|... - gi\|55981432\|ref\|YP_144729.1\| long-chain-fatty-acid--CoA ligase [Thermus thermophilus HB8], gi\|557728...	477.0	[0..5]	[508..31]
gi\|106772735, gi... - gi\|148656221\|ref\|YP_001276426.1\| AMP-dependent synthetase and ligase [Roseiflexus sp. RS-1], gi\|1485...	474.0	[0..3]	[508..6]
gi\|46197026, gi\|... - gi\|46199401\|ref\|YP_005068.1\| long-chain-fatty-acid-CoA ligase [Thermus thermophilus HB27], gi\|461970...	474.0	[0..5]	[508..31]
gi\|75701558, gi\|... - gi\|75907833\|ref\|YP_322129.1\| amino acid adenylation [Anabaena variabilis ATCC 29413], gi\|75701558\|gb...	473.0	[0..3]	[506..547]
gi\|27817222 - gi\|27817222\|gb\|AAO23333.1\| NcpA [Nostoc sp. ATCC 53789]	472.0	[0..2]	[512..2667]
gi\|77996178, gi\|... - gi\|78044063\|ref\|YP_360551.1\| long-chain-fatty-acid--CoA ligase [Carboxydothermus hydrogenoformans Z-...	471.0	[0..3]	[509..30]
gi\|2633363, gi\|1... - gi\|2633363\|emb\|CAB12867.1\| yhfL [Bacillus subtilis subsp. subtilis str. 168], gi\|16078091\|ref\|NP_388... gi\|7437856, gi\|2... - gi\|81668895\|sp\|O07610.1\|LCFB_BACSU RecName: Full=Long-chain-fatty-acid--CoA ligase; AltName: Full=Lo...	467.0	[0..6]	[504..7]

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Predicted Domain #1

Region A:
Residues: [1-512]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFTTLYSAI QGDASARALV APSLNAELSF SELRIAIMDL QRQIASLGIK VGDPVNIAIP  60
   61 NGLEFVVAFY AVSWQRAICG PLNSNYKQSE FEFYIDDLKS KLVIVPEGSV AANTPAVRAA 120
  121 KKLSVAVAEL AWCPKSRLVR IVHFEGAKIN APQPLGLPQP DDVMLVLHTS GTTGRPKVVP 180
  181 LTHKNLCRSI HNITTSYRLD PRDTSYVVMP LFHVHGLLCG LLSTLASGGC AVVPPKFSAH 240
  241 SFWKEFIQYG ATWYTAVPTI HQILLRTPPP KPLPRIRFIR SCSSPLAPPV LSKLEATFRA 300
  301 PVLEAYAMTE ASHQMTTNPL PPLVHKPHSV GKPFGVELKI LDQKGNEMPQ GKEGEICVRG 360
  361 INVTKGYLNN PAANKSSFTK DRFFRTGDEG KLDKDGYVFI TGRIKELVNR GGEKISPAEI 420
  421 DAVLMQHPDV SEAVCFAVPD EKYGQDIQAA INPVAGKTVT PKQLHDYLEQ KVAAFKIPKK 480
  481 FYFTDRIPKT ATGKVQRRLV CDAFFNHSKA KL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	124.0
Match:	2p2bA
Description:	No description for 2p2bA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits