YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC3G9.11c
Organism:	Schizosaccharomyces pombe
Length:	570 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC3G9.11c.

Description	E-value	Query Range	Subject Range
gi\|17232105, gi\|... - gi\|17232105\|ref\|NP_488653.1\| acetolactate synthase 3 catalytic subunit [Nostoc sp. PCC 7120], gi\|171... gi\|25291313 - pir\|\|AE2382 acetohydroxy acid synthase [imported] - Nostoc sp. (strain PCC 7120)	527.0	[0..2]	[566..29]
gi\|75908969, gi\|... - gi\|75908969\|ref\|YP_323265.1\| acetolactate synthase 3 catalytic subunit [Anabaena variabilis ATCC 294...	526.0	[0..2]	[566..29]
gi\|71671664, gi\|... - gi\|71674688\|ref\|ZP_00672434.1\| Acetolactate synthase, large subunit, biosynthetic type [Trichodesmiu...	525.0	[0..2]	[566..8]
gi\|21226772, gi\|... - gi\|21226772\|ref\|NP_632694.1\| acetolactate synthase 3 catalytic subunit [Methanosarcina mazei Go1], g...	521.0	[0..2]	[568..5]
gi\|88602528, gi\|... - gi\|88602528\|ref\|YP_502706.1\| acetolactate synthase, large subunit, biosynthetic type [Methanospirill...	519.0	[0..5]	[566..1]
gi\|22295020, gi\|... - gi\|22298839\|ref\|NP_682086.1\| acetolactate synthase 3 catalytic subunit [Thermosynechococcus elongatu...	519.0	[0..4]	[566..1]
gi\|72394929, gi\|... - gi\|73667767\|ref\|YP_303782.1\| acetolactate synthase 3 catalytic subunit [Methanosarcina barkeri str. ...	516.0	[0..2]	[567..5]
gi\|7436698 - pir\|\|C70341 acetolactate synthase (EC 4.1.3.18) large chain - Aquifex aeolicus gi\|15605942, gi\|... - gi\|2983101\|gb\|AAC06706.1\| acetolactate synthase large subunit [Aquifex aeolicus VF5], gi\|15605942\|re...	514.0	[0..1]	[566..1]
gi\|20092588, gi\|... - gi\|20092588\|ref\|NP_618663.1\| acetolactate synthase 3 catalytic subunit [Methanosarcina acetivorans C...	513.0	[0..2]	[568..5]
gi\|33861083, gi\|... - gi\|33861083\|ref\|NP_892644.1\| acetolactate synthase 3 catalytic subunit [Prochlorococcus marinus subs...	513.0	[0..6]	[566..21]

Back

Predicted Domain #1

Region A:
Residues: [1-570]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSEKVLVGE YLFTRLLQLG IKSILGVPGD FNLALLDLIE KVGDETFRWV GNENELNGAY  60
   61 AADAYARVKG ISAIVTTFGV GELSALNGFA GAYSERIPVV HIVGVPNTKA QATRPLLHHT 120
  121 LGNGDFKVFQ RMSSELSADV AFLDSGDSAG RLIDNLLETC VRTSRPVYLA VPSDAGYFYT 180
  181 DASPLKTPLV FPVPENNKEI EHEVVSEILE LIEKSKNPSI LVDACVSRFH IQQETQDFID 240
  241 ATHFPTYVTP MGKTAINESS PYFDGVYIGS LTEPSIKERA ESTDLLLIIG GLRSDFNSGT 300
  301 FTYATPASQT IEFHSDYTKI RSGVYEGISM KHLLPKLTAA IDKKSVQAKA RPVHFEPPKA 360
  361 VAAEGYAEGT ITHKWFWPTF ASFLRESDVV TTETGTSNFG ILDCIFPKGC QNLSQVLWGS 420
  421 IGWSVGAMFG ATLGIKDSDA PHRRSILIVG DGSLHLTVQE ISATIRNGLT PIIFVINNKG 480
  481 YTIERLIHGL HAVYNDINTE WDYQNLLKGY GAKNSRSYNI HSEKELLDLF KDEEFGKADV 540
  541 IQLVEVHMPV LDAPRVLIEQ AKLTASLNKQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	119.0
Match:	2g1iA
Description:	No description for 2g1iA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits