YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBPB2B2.01
Organism:	Schizosaccharomyces pombe
Length:	585 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBPB2B2.01.

Description	E-value	Query Range	Subject Range
orf19.3195 - HIP1 CGDID:CAL0002448 Assembly 19, Contig19-10170 (67622, 69421) CDS, translated using codon table 1... gi\|46436194, gi\|... - gi\|68482961\|ref\|XP_714611.1\| potential general amino acid permease [Candida albicans SC5314], gi\|464...	335.0	[0..1]	[585..1]
GNP1_YEAST - High-affinity glutamine permease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GNP1 PE... GNP1 - High-affinity glutamine permease, also transports Leu, Ser, Thr, Cys, Met and Asn; expression is ful...	331.0	[0..23]	[585..88]
gi\|238482071, gi... - gi\|238482071\|ref\|XP_002372274.1\| amino acid permease (Gap1), putative [Aspergillus flavus NRRL3357],... gi\|169765514 - gi\|169765514\|ref\|XP_001817228.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83765083 - gi\|83765083\|dbj\|BAE55226.1\| unnamed protein product [Aspergillus oryzae]	328.0	[0..41]	[585..40]
gi\|50292087, gi\|... - gi\|50292087\|ref\|XP_448476.1\| unnamed protein product [Candida glabrata], gi\|49527788\|emb\|CAG61437.1\|... gi\|49527788 - gi\|49527788\|emb\|CAG61437.1\| unnamed protein product [Candida glabrata]	327.0	[0..75]	[585..138]
AGP1_SACBA - General amino acid permease AGP1 OS=Saccharomyces bayanus GN=AGP1 PE=3 SV=1 AGP1_SACU7 - General amino acid permease AGP1 OS=Saccharomyces uvarum (strain ATCC 76518 / CBS 7001 / CLIB 283 / ...	326.0	[0..4]	[585..32]
YI0B_SCHPO - Uncharacterized amino-acid permease C869.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) G... SPAC869.11 - amino acid permease, unknown 6	324.0	[0..15]	[585..10]

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Predicted Domain #1

Region A:
Residues: [1-72]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAYVRDSES VYSESYPPEN FISNEPEKSK DKDNFNGEEV ISYVGEVETV PAKEENVFRR  60
   61 FINGFKIEKN QQ

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.09
Match:	1qd7B
Description:	30S subunit
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [73-585]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSAGQGLKRR LKSRHIQMIG IGGAIGTGVW VGSSKSLYRG GAASVLIDYC IVGTMVFCTV  60
   61 YALGELAVAF PTRGSFVTHA TRFIDESWGF ALSWNYVFSF IVTIPLELTT GTMMIKYWTN 120
  121 LNSGIWVTVF IVFLFFINIF GVKGYGEMEF IMSTIKVVAM CGFIILGIII DCGGVPTDHR 180
  181 GYMGTHIFRE NAFRHKFKGF CAVFTSAAFS FSGTEYVGVA AAETENPAKA FPVAVRQTLF 240
  241 RIAIFYILSL FIVSLLISGA DPRLTSYHGV DASPFVLAIK DANIKALPSI LNAIILISVI 300
  301 SSANAQLYAG SRAIHSLGCN GFAPKCFTLV DREGRPLVAL LILFLFMFLG YLVETGQYDT 360
  361 VFDWMLSISG LGTLFCWGSI CLAHIRYRAA MKHQNRSLKE VGFVSPFNVY ASYYAFILVC 420
  421 LVLAAEFYVS IFPVGGKPDA SAFFENYLSA PVILVFFICH KLYYKTKRIT LSNMDLETDF 480
  481 AYKTPVEEEE EEEKSAGSLS IKQRMKKLSD MMC

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.57
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits