YRC Public Data Repository - Protein Structure Prediction

Protein:	dlp1
Organism:	Schizosaccharomyces pombe
Length:	294 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dlp1.

Description	E-value	Query Range	Subject Range
gi\|20386366 - gi\|20386366\|gb\|AAM21638.1\|AF492022_1 geranylgeranyl pyrophosphate synthase [Cistus incanus subsp. cr...	256.0	[0..4]	[294..30]
gi\|34484306 - gi\|34484306\|gb\|AAQ72786.1\| geranylgeranyl diphosphate synthase [Ginkgo biloba]	255.0	[0..4]	[294..55]
gi\|56122554 - gi\|56122554\|gb\|AAV74395.1\| geranylgeranyl diphosphate synthase [Adonis aestivalis var. palaestina]	254.0	[0..8]	[294..33]
gi\|58201026 - gi\|58201026\|gb\|AAW66658.1\| geranyl diphosphate synthase [Picrorhiza kurrooa]	250.0	[0..3]	[294..34]
gi\|46241274 - gi\|46241274\|gb\|AAS82860.1\| geranyl diphosphate synthase large subunit [Antirrhinum majus]	249.0	[0..3]	[294..35]
GGPPS_HEVBR - Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1	247.0	[0..3]	[294..31]
gi\|22535957 - gi\|22535957\|gb\|AAN01133.1\| geranyl diphosphate synthase [Abies grandis]	247.0	[0..2]	[294..45]
GGPPS_CAPAN - Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1	247.0	[0..4]	[294..26]
gi\|62129446, gi\|... - gi\|62181813\|ref\|YP_218230.1\| octaprenyl diphosphate synthase [Salmonella enterica subsp. enterica se... lcl\|NC_016856.1_... - [gene=ispB] [protein=octaprenyl diphosphate synthase] [protein_id=YP_005239484.1] [location=3487069....	246.0	[0..16]	[294..32]
gi\|6277254 - gi\|6277254\|dbj\|BAA86284.1\| geranylgeranyl pyrophosphate synthase [Croton sublyratus]	246.0	[0..7]	[294..30]

Back

Predicted Domain #1

Region A:
Residues: [1-294]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFPFASLLK RPSAISSLLS LKKPGSWSSI LLKAVGVLSR DSRWHSDLLK MLTEEMDSLN  60
   61 GQINTWTDNN PLLDEITKPY RKSSTRFFHP LLVLLMSRAS VNGDPPSQQL FQRYKQLARV 120
  121 TELIHAANII HINIGEEQSN EQIKLATLVG DYLLGKASVD LAHLENNAIT EIMASVIANL 180
  181 VEGHFGSRQN GSVGLSNERT ILLQSAFMPA KACLCASILN NSSQYINDAC FNYGKFLGLS 240
  241 LQLAHKPVSP DAQVLQKNND ILKTYVENAK SSLSVFPDIE AKQALMEIAN SVSK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.221849
Match:	1wy0A
Description:	Crystal structure of geranylgeranyl pyrophosphate synthetase from Pyrococcus horikoshii Ot3
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits