YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC29B12.14c
Organism:	Schizosaccharomyces pombe
Length:	581 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC29B12.14c.

Description	E-value	Query Range	Subject Range
fur4 - uracil permease FUR4_SCHPO - Uracil permease OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fur4 PE=1 SV=2	278.0	[0..14]	[581..16]
gi\|42552670, gi\|... - gi\|46121799\|ref\|XP_385453.1\| hypothetical protein FG05277.1 [Gibberella zeae PH-1], gi\|42552670\|gb\|E...	275.0	[0..13]	[562..3]
gi\|11278826, gi\|... - gi\|1420854\|emb\|CAA67256.1\| uracil permease [Schizosaccharomyces pombe], pir\|\|T43295 uracil transport...	270.0	[0..14]	[581..16]
gi\|145019234, gi... - gi\|39945764\|ref\|XP_362419.1\| hypothetical protein MGG_08002 [Magnaporthe grisea 70-15], gb\|EAA57033....	268.0	[0..16]	[576..7]
gi\|85108010 - gi\|85108010\|ref\|XP_962492.1\| uracil permease [Neurospora crassa OR74A] gi\|28924099, gi\|... - gi\|32414281\|ref\|XP_327620.1\| hypothetical protein [Neurospora crassa], gi\|28924099\|gb\|EAA33256.1\| ur...	260.0	[0..15]	[566..6]
gi\|159131446 - gi\|159131446\|gb\|EDP56559.1\| uridine permease Fui1, putative [Aspergillus fumigatus A1163] gi\|70995872, gi\|... - gi\|70995872\|ref\|XP_752691.1\| uridine permease Fui1 [Aspergillus fumigatus Af293], gi\|66850326\|gb\|EAL...	258.0	[0..16]	[572..3]
gi\|833812 - gi\|833812\|gb\|AAB48002.1\| high-affinity glutamine permease	253.0	[0..2]	[553..95]
gi\|50292087, gi\|... - gi\|50292087\|ref\|XP_448476.1\| unnamed protein product [Candida glabrata], gi\|49527788\|emb\|CAG61437.1\|... gi\|49527788 - gi\|49527788\|emb\|CAG61437.1\| unnamed protein product [Candida glabrata]	250.0	[0..48]	[556..140]
gi\|46441858, gi\|... - gi\|68471930\|ref\|XP_720008.1\| hypothetical protein CaO19.313 [Candida albicans SC5314], gi\|46441858\|g... orf19.313 - DAL4 CGDID:CAL0004663 Assembly 19, Contig19-10046 (142933, 141221) CDS, reverse complemented, transl...	250.0	[0..11]	[568..2]

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Predicted Domain #1

Region A:
Residues: [1-507]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKWRLTKED FTPKGMWRNF KNFIVIEAKP GTTLAERFLT NEDLYPVPKS QRVWGPWNYV  60
   61 AFWLADSVNV NTWMIAGTAV ESGLSWWEAW ITVWVGYTIA AFILTIAGRA GAVYHISFPV 120
  121 LSRSSFGIWG SLWPILNRAV MACVWYGVQA WIGGECVTLM IRSIWPSFSH IPNTMAKSGT 180
  181 ETYQWVGFFI FWLISNVAIW FPVYQIRHLF TAKSFLAPPA AIAFLIWALV KAHGAGDAIH 240
  241 AKTQLSTWNH GWAVTAGIIS CLDNFATLIV NNPDFTRFAT TPNAPIFPQL ITIPMGFGIT 300
  301 TLIGVLVGSA SKSIYGENIW NPLDLLKSFL DHSNHHGVRA GVFFISTGLC LAQLGVNIAA 360
  361 NTVSAGNDTS ALCPMFINIR RGGYIASIIG ICMCPWNLLS SSNSFANSLS AYAVFLSSFA 420
  421 GILIADYFVI RKGYLKVDAL YTINPNEPYW FTYGINLRAF ASYICGLLIN VVGLAGAVGD 480
  481 KVPKAALTMN NIAYLLGIVT SFLSHLI

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.28
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [508-581]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ICKIFPVTAC GEKFLDERPE ETDNYLLTLE STEDTISSYE ETEGIPVKKV SYDSKEKSDD  60
   61 GKSGGIDIKE SSVF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.01
Match:	4hb1A
Description:	A DESIGNED FOUR HELIX BUNDLE PROTEIN.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

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Top Sequence Alignment Hits