YRC Public Data Repository - Protein Structure Prediction

Protein:	amt1
Organism:	Schizosaccharomyces pombe
Length:	497 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for amt1.

Description	E-value	Query Range	Subject Range
gi\|46107292, gi\|... - gi\|46107292\|ref\|XP_380705.1\| hypothetical protein FG00529.1 [Gibberella zeae PH-1], gi\|42545722\|gb\|E...	468.0	[0..1]	[485..1]
gi\|17221150 - gi\|17221150\|gb\|AAL11032.1\| high affinity ammonium transporter [Tuber borchii]	466.0	[0..14]	[476..20]
gi\|85112788 - gi\|85112788\|ref\|XP_964410.1\| ammonium transporter MEP1 [Neurospora crassa OR74A] gi\|28926191, gi\|... - gi\|32420499\|ref\|XP_330693.1\| hypothetical protein [Neurospora crassa], gi\|28926191\|gb\|EAA35174.1\| am...	463.0	[0..1]	[458..1]
gi\|38101985, gi\|... - gi\|39974633\|ref\|XP_368707.1\| hypothetical protein MGG_00537 [Magnaporthe grisea 70-15], gb\|EAA48879....	462.0	[0..1]	[459..1]
gi\|66847348, gi\|... - gi\|70989735\|ref\|XP_749717.1\| ammonium transporter MeaA [Aspergillus fumigatus Af293], gi\|66847348\|gb...	459.0	[0..2]	[457..21]
gi\|18693015 - gi\|18693015\|gb\|AAL73118.1\| ammonium permease MEPA [Emericella nidulans] gi\|49086564, gi\|... - gi\|67518027\|ref\|XP_658785.1\| hypothetical protein AN1181.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	458.0	[0..3]	[472..2]
gi\|90306017, gi\|... - gi\|90306017\|gb\|EAS35648.1\| hypothetical protein CIMG_01002 [Coccidioides immitis RS], gi\|119193250\|r...	456.0	[0..2]	[457..16]
gi\|111064493 - gi\|111064493\|gb\|EAT85613.1\| hypothetical protein SNOG_06962 [Phaeosphaeria nodorum SN15]	455.0	[0..11]	[487..19]
gi\|83773994 - gi\|83773994\|dbj\|BAE64119.1\| unnamed protein product [Aspergillus oryzae] gi\|169781578 - gi\|169781578\|ref\|XP_001825252.1\| hypothetical protein [Aspergillus oryzae RIB40]	453.0	[0..12]	[447..12]

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Predicted Domain #1

Region A:
Residues: [1-497]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTTDATPT PSGVNGGDSM TVNLNQFYNN GDVAWILTST ALVFIMIPGV GFFYSGLARR  60
   61 RSAISMLFLS MMSVAIVAFQ WFFWGYSLTF SHEGGPYIGS LANFGLRQTL GRPSSGASSV 120
  121 PDILFCVFQG MFAAITPALA IGAAADRGRM FPCMVFMFLW TSIVYDPIAF WTWNPNGWLN 180
  181 KLGSYDFAGG SPVHISSGMA ALAYSIVIGK RCDHGTTKYR PHNVPHVVLG TVFLWFGWFG 240
  241 FNGGSSAAAN MRGVMAVVVT HLAASVGGIV WCVIDFAKNR HWSVVGFCEG AVAGLVAITP 300
  301 GSGFVPPWAA VVIGALGAVF CYAATYLKKI IRVDDALDIF AEHGVGGMVG NILTALFAAD 360
  361 YIEALDGSGT AYTGGWITHH YIQLGYQLAD TVSCAAYSFA VSCALLFVMN YIPGLSLRVS 420
  421 REDEVLGLDK IELGESAYYY KDSTDEPPPI TTSGVQYTSP TVSDSASNEK EQEHRAQNEA 480
  481 QKEEEYRAES EAQAPAI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	95.69897
Match:	2b2fA
Description:	Ammonium Transporter Amt-1 from A.fulgidus (Native)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits