YRC Public Data Repository - Protein Structure Prediction

Protein:	ubp10
Organism:	Schizosaccharomyces pombe
Length:	502 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ubp10.

Description	E-value	Query Range	Subject Range
gi\|113426698 - gi\|113426698\|ref\|XP_042698.4\| PREDICTED: similar to Ubiquitin carboxyl-terminal hydrolase 22 (Ubiqui...	318.0	[0..40]	[501..305]
gi\|73980361 - gi\|73980361\|ref\|XP_865385.1\| PREDICTED: similar to ubiquitin specific protease 39 isoform 3 [Canis f...	306.0	[0..26]	[501..69]
gi\|26328829 - gi\|26328829\|dbj\|BAC28153.1\| unnamed protein product [Mus musculus]	304.0	[0..26]	[501..72]
gi\|114578552 - gi\|114578552\|ref\|XP_515591.2\| PREDICTED: ubiquitin specific protease 39 isoform 4 [Pan troglodytes]	303.0	[0..26]	[501..73]
gi\|109103703 - gi\|109103703\|ref\|XP_001089375.1\| PREDICTED: similar to ubiquitin specific protease 39 isoform 9 [Mac...	302.0	[0..26]	[501..73]

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Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSENKDKNNI LKRHIEEDNN IDNGKRKKLE LGKDMEDVHD IASKEMEEHE TTPIISQNLY  60
   61 LDTINRKLLD FDFEKVCSVS LTNLSVYACL VCGRYFQGRG PSSHAYFHAL TENHHVFVNC 120
  121 STLKFYVLPE SYQVESSALQ DIAYVMRPTF TKLEVQRLDH TPQL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.0
Match:	2g43A
Description:	No description for 2g43A was found.

Predicted Domain #2

Region A:
Residues: [165-502]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SYDLMLKPYV PGFVGMNNIK NNDYFNVVIH MLAHVKPFRN YFLLKNFDNC PQLVQRLAIL  60
   61 IRKLWNHKAF KSHVSPQELI QEVTVLSHKK YSINEQKDPV EFLSWFLNTL HNCLGGKKST 120
  121 IAKPTSIVHY SFQGFVRIES QKIRQHAEKG EQVVFTGDRV IQTNVVPFLY LTLDLPPKPI 180
  181 FQDEFEGNII PQVELKEILN KYNGVHTQEL AGMRRRFHLM TAPPYFIFHI KRFMKNNYFT 240
  241 ERNQTIVTFP LDDFDMSPFI DDSFIQSNPK ISTKYNLVAN IIHESVTHAE EEFHNFRIQI 300
  301 RNPSTNKWYQ IQDLYVEEIS SDMIRLGESF IQLWERSS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	66.69897
Match:	2ibiA
Description:	No description for 2ibiA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits