YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC6B1.03c
Organism:	Schizosaccharomyces pombe
Length:	272 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC6B1.03c.

Description	E-value	Query Range	Subject Range
gi\|46128697, gi\|... - gi\|46128697\|ref\|XP_388902.1\| hypothetical protein FG08726.1 [Gibberella zeae PH-1], gi\|42549580\|gb\|E...	200.0	[0..48]	[265..215]
gi\|85074919 - gi\|85074919\|ref\|XP_965827.1\| hypothetical protein NCU00687 [Neurospora crassa OR74A] gi\|32408773, gi\|... - gi\|32408773\|ref\|XP_324867.1\| hypothetical protein [Neurospora crassa], gi\|28927640\|gb\|EAA36591.1\| pr...	180.0	[0..43]	[272..47]
gi\|145017407, gi... - gi\|86196487\|gb\|EAQ71125.1\| hypothetical protein MGCH7_ch7g532 [Magnaporthe grisea 70-15], gi\|3997062...	160.0	[0..49]	[265..138]
pal1 - membrane associated protein Pal1 PAL1_SCHPO - Protein pal1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pal1 PE=1 SV=1	158.0	[0..68]	[268..97]
gi\|71017783, gi\|... - gi\|71017783\|ref\|XP_759122.1\| hypothetical protein UM02975.1 [Ustilago maydis 521], ref\|XP_400590.1\| ...	158.0	[0..37]	[221..314]
gi\|49090320, gi\|... - gi\|67524069\|ref\|XP_660096.1\| hypothetical protein AN2492.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	155.0	[0..36]	[271..122]
gi\|68468351, gi\|... - gi\|68468594\|ref\|XP_721616.1\| hypothetical protein CaO19.9227 [Candida albicans SC5314], gi\|68468351\|... orf19.9227 - orf19.1658 CGDID:CAL0000043 Assembly 19, Contig19-20123 (110162, 111199) CDS, translated using codon...	152.0	[0..55]	[262..45]
gi\|115391407, gi... - gi\|115391407\|ref\|XP_001213208.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	143.0	[0..36]	[271..124]
YHP7_YEAST - Uncharacterized protein YHR097C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YHR097C ... gi\|151944043 - gi\|151944043\|gb\|EDN62336.1\| conserved protein [Saccharomyces cerevisiae YJM789] YHR097C - Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to th... gi\|190405876 - gi\|190405876\|gb\|EDV09143.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]	143.0	[0..45]	[222..20]
gi\|88182267, gi\|... - gi\|88182267\|gb\|EAQ89735.1\| hypothetical protein CHGG_06354 [Chaetomium globosum CBS 148.51], gi\|1161...	139.0	[0..130]	[265..260]

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Predicted Domain #1

Region A:
Residues: [1-272]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKNNPFVHS NANFPPLQTH NFEDIPEKGY TIFSSPRIDV FNEERPHSGI NLNQYQHHED  60
   61 DAELQSNNPF LNKDSGVDLL KLHSRSNSRI YEAKPKRVIK PKIAIIECNE MAENPPFWNQ 120
  121 NKAFERKVSS KESFNMLGYD KIDKLDSSNS YLGDFGVHHD GPFDPCSKHR NLDAATSPIA 180
  181 AFSSQSEANS LPAFLLPNNS KGVEKSEENE DGVTDNDSSN VNSSTNESPN PTDINVCSND 240
  241 DATDNTENNL KKKASFIYRL RKHLKRNSIE TE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits