YRC Public Data Repository - Protein Structure Prediction

Protein:	set5
Organism:	Schizosaccharomyces pombe
Length:	319 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for set5.

Description	E-value	Query Range	Subject Range
gi\|85109942 - gi\|85109942\|ref\|XP_963161.1\| hypothetical protein NCU09495 [Neurospora crassa OR74A] gi\|38524259, gi\|... - gi\|38524259\|emb\|CAE75723.1\| conserved hypothetical protein [Neurospora crassa], gi\|32418752\|ref\|XP_3...	180.0	[0..4]	[279..5]
gi\|38109514, gi\|... - gi\|39957530\|ref\|XP_364335.1\| hypothetical protein MG09180.4 [Magnaporthe grisea 70-15], gb\|EAA55373....	176.0	[0..2]	[282..152]
gi\|46139505, gi\|... - gi\|46139505\|ref\|XP_391443.1\| hypothetical protein FG11267.1 [Gibberella zeae PH-1], gi\|42555774\|gb\|E...	172.0	[0..5]	[279..6]
gi\|116283746 - gi\|116283746\|gb\|AAH28104.1\| SMYD2 protein [Homo sapiens]	166.0	[0..1]	[269..69]
gi\|73960928 - gi\|73960928\|ref\|XP_537149.2\| PREDICTED: similar to SET and MYND domain containing protein 2 (HSKM-B)...	160.0	[0..1]	[284..84]
gi\|109018318 - gi\|109018318\|ref\|XP_001106482.1\| PREDICTED: SET and MYND domain containing 2 [Macaca mulatta]	159.0	[0..1]	[269..85]

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Predicted Domain #1

Region A:
Residues: [1-176]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPYETEIYK VVPIPNKGMG MIAKVKIPVG TRIFAETPLI RTKSDAKEIE EALSTKTKEE  60
   61 QEAFHRLFNA HPDTMGPFLG PFYSNALTID ETKGGMFLLG SRMNHDCSPN VKHTWNPRLD 120
  121 QVTVHAVRDI EAGEEILTTY IDLHKSHTER QKILLEHFGF KCYCSVCSVE ERKIRK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.39794
Match:	2o8jA
Description:	No description for 2o8jA was found.

Predicted Domain #2

Region A:
Residues: [177-319]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ISDLRRKQLA YYDRTMAKMC IVNPRGALRA LRHRIHIAHE ELLFGRLDII ALLDAFRLCV  60
   61 IHGDFERASI FAKKGTKAIS LYEGTDSEKY LKISKYVENP RSHALAEGVP ALPLFLEEDD 120
  121 ELSDLEDNLW GCKLEEDVYS DTD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits