YRC Public Data Repository - Protein Structure Prediction

Protein:	pmp3
Organism:	Schizosaccharomyces pombe
Length:	50 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pmp3.

Description	E-value	Query Range	Subject Range
gi\|145009364, gi... - gi\|39949765\|ref\|XP_363224.1\| hypothetical protein MGG_08808 [Magnaporthe grisea 70-15], gb\|EAA51286....	82.0	[0..1]	[50..6]
gi\|46121245, gi\|... - gi\|46121245\|ref\|XP_385177.1\| hypothetical protein FG05001.1 [Gibberella zeae PH-1], gi\|42551259\|gb\|E...	81.0	[0..2]	[50..7]
gi\|70997695, gi\|... - gi\|70997695\|ref\|XP_753585.1\| stress response RCI peptide [Aspergillus fumigatus Af293], gi\|66851221\|... gi\|159126684 - gi\|159126684\|gb\|EDP51800.1\| stress response RCI peptide, putative [Aspergillus fumigatus A1163]	79.0	[0..1]	[50..6]
gi\|40745267, gi\|... - gi\|67523713\|ref\|XP_659916.1\| hypothetical protein AN2312.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	78.0	[0..1]	[49..6]
gi\|238506933, gi... - gi\|238506933\|ref\|XP_002384668.1\| stress response RCI peptide, putative [Aspergillus flavus NRRL3357]... gi\|83776210 - gi\|83776210\|dbj\|BAE66329.1\| unnamed protein product [Aspergillus oryzae] gi\|169786003 - gi\|169786003\|ref\|XP_001827462.1\| hypothetical protein [Aspergillus oryzae RIB40]	78.0	[0..1]	[50..6]
gi\|119183159, gi... - gi\|90301432\|gb\|EAS31063.1\| predicted protein [Coccidioides immitis RS], gi\|119183159\|ref\|XP_00124264...	76.0	[0..1]	[50..8]
gi\|49653203 - gi\|49653203\|emb\|CAG85547.1\| DEHA2B13618p [Debaryomyces hansenii] gi\|49653203, gi\|... - gi\|50416236\|ref\|XP_457538.1\| hypothetical protein DEHA0B13717g [Debaryomyces hansenii CBS767], gi\|49...	75.0	[0..1]	[50..10]
gi\|32411383, gi\|... - gi\|32411383\|ref\|XP_326172.1\| predicted protein [Neurospora crassa], gi\|28924188\|gb\|EAA33343.1\| conse... gi\|85108462 - gi\|85108462\|ref\|XP_962579.1\| hypothetical protein NCU06317 [Neurospora crassa OR74A]	74.0	[0..1]	[49..6]
gi\|114190175, gi... - gi\|115401292\|ref\|XP_001216234.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	74.0	[0..1]	[50..6]

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Predicted Domain #1

Region A:
Residues: [1-50]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQVIFAIIL PPLGVFLERG CGADVIINIL LCCLGYVPGI IHALYIILKY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits