YRC Public Data Repository - Protein Structure Prediction

Protein:	pvg1
Organism:	Schizosaccharomyces pombe
Length:	401 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pvg1.

Description	E-value	Query Range	Subject Range
gi\|75700793, gi\|... - gi\|75907068\|ref\|YP_321364.1\| polysaccharide pyruvyl transferase [Anabaena variabilis ATCC 29413], gi...	387.0	[0..72]	[397..5]
gi\|42544359, gi\|... - gi\|46111633\|ref\|XP_382874.1\| hypothetical protein FG02698.1 [Gibberella zeae PH-1], gi\|42544359\|gb\|E...	386.0	[0..58]	[399..88]
gi\|17230763, gi\|... - gi\|17230763\|ref\|NP_487311.1\| hypothetical protein all3271 [Nostoc sp. PCC 7120], gi\|17132366\|dbj\|BAB... gi\|25303520 - pir\|\|AH2214 hypothetical protein all3271 [imported] - Nostoc sp. (strain PCC 7120)	382.0	[0..72]	[399..1]
gi\|2766552 - gi\|2766552\|gb\|AAB95422.1\| polysaccharide polymerization protein [Rhizobium leguminosarum bv. trifoli... gi\|116253389, gi... - gi\|116253389\|ref\|YP_769227.1\| putative polysaccharide polymerisation protein [Rhizobium leguminosaru...	359.0	[0..65]	[398..3]
gi\|15007260 - gi\|15007260\|gb\|AAK77317.1\| putative exopolysaccharide polymerization protein PssK [Rhizobium legumin...	346.0	[0..65]	[398..3]
gi\|116090920, gi... - gi\|48866426\|ref\|ZP_00320282.1\| COG5039: Exopolysaccharide biosynthesis protein [Oenococcus oeni PSU-...	343.0	[0..70]	[400..2]
gi\|86282918, gi\|... - gi\|86358816\|ref\|YP_470708.1\| exopolysaccharide polymerization protein [Rhizobium etli CFN 42], gi\|86...	340.0	[0..65]	[398..3]
gi\|23024129, gi\|... - gi\|23024129\|ref\|ZP_00063351.1\| COG5039: Exopolysaccharide biosynthesis protein [Leuconostoc mesenter...	337.0	[0..70]	[400..2]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFANINIRKS VWLFLLAAVS CTLFIYGVTR TDLQTLKNPS SLTSPSSSTS VDKKKPLFTK  60
   61 SPRNSASCES TITLQSNLLF TYYKHYFAGI KKVALIGFPD HPNKGDSAIY VAEKKLLDAL 120
  121 NIEVVYITAQ EADYSASELK SIISDIP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [148-312]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RDEFALAFHG GGNFGDLYPD HQHLRELVVR DFPSFTTISF PQSVWYNEQQ LLEQASILYA  60
   61 ENPNITLVTR DRQSYGFAVD AFGKHNEVLL TPDIVFFMGP IPEIREATPI THDVLILARL 120
  121 DHEGGQQHGA EDYYRDTLNA ANLTYSVEDW LLWDPPVAQN PDSSF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [313-401]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDRGQARYEA GAEFLASARV VITDRLHAHI LSTLMGIPHI VVENSQMGKI TNYHNTWLHG  60
   61 CTLDGVSVVV DSVDKALSLL LEWNEAGYF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits