YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC10F6.14c
Organism:	Schizosaccharomyces pombe
Length:	535 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC10F6.14c.

Description	E-value	Query Range	Subject Range
gi\|25534796 - pir\|\|AH2425 hypothetical protein all4960 [imported] - Nostoc sp. (strain PCC 7120) gi\|17134098, gi\|... - gi\|17232452\|ref\|NP_489000.1\| hypothetical protein all4960 [Nostoc sp. PCC 7120], gi\|17134098\|dbj\|BAB...	309.0	[0..10]	[535..5]
gi\|75702177, gi\|... - gi\|75908452\|ref\|YP_322748.1\| hypothetical protein Ava_2235 [Anabaena variabilis ATCC 29413], gi\|7570...	306.0	[0..10]	[535..1]
gi\|67855521, gi\|... - gi\|67922593\|ref\|ZP_00516099.1\| ABC-1 [Crocosphaera watsonii WH 8501], gi\|67855521\|gb\|EAM50774.1\| ABC...	292.0	[0..63]	[535..50]
gi\|186465550, gi... - gi\|23129126\|ref\|ZP_00110959.1\| COG0661: Predicted unusual protein kinase [Nostoc punctiforme PCC 731...	286.0	[0..63]	[534..16]
gi\|71675663, gi\|... - gi\|71675663\|ref\|ZP_00673407.1\| ABC-1 [Trichodesmium erythraeum IMS101], gi\|71671131\|gb\|EAO27797.1\| A...	281.0	[0..52]	[535..48]
gi\|56752324, gi\|... - gi\|56752324\|ref\|YP_173025.1\| hypothetical protein syc2315_d [Synechococcus elongatus PCC 6301], gi\|5...	281.0	[0..63]	[535..26]
gi\|46130086, gi\|... - gi\|81300587\|ref\|YP_400795.1\| hypothetical protein Synpcc7942_1778 [Synechococcus elongatus PCC 7942]...	281.0	[0..63]	[535..23]
gi\|35213695, gi\|... - gi\|37522693\|ref\|NP_926070.1\| hypothetical protein glr3124 [Gloeobacter violaceus PCC 7421], gi\|35213...	281.0	[0..31]	[535..5]
Y005_SYNY3 - Uncharacterized protein sll0005 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0005 PE=3 SV=1 Y005_SYNY3 - Uncharacterized protein sll0005 OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) GN=sll0005... gi\|7469256 - pir\|\|S76354 ABC1-type transport protein sll0005 - Synechocystis sp. (strain PCC 6803)	278.0	[0..64]	[535..58]
gi\|22295385, gi\|... - gi\|22299203\|ref\|NP_682450.1\| hypothetical protein tlr1660 [Thermosynechococcus elongatus BP-1], gi\|2...	277.0	[0..63]	[534..24]

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Predicted Domain #1

Region A:
Residues: [1-535]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTSWRTISL LQKTTSRFIK RSKTYADVRY NSQALQNHGV PGNKRKWMKR FVFVGAAGIG  60
   61 VYAWDRVYNA HALTRSIRTV YTASIIAADY KLNFSEKKAD KIDALHQRVA QRLFKTIYKN 120
  121 GGLYIKMGQI IAMQSNNLPE AYGKAFQGMF DNAPQVEWEE LQDIFKEQYG RPVEEVFASI 180
  181 EKRAAASASI AQVHRAVLPS GEKVAVKIQK PDVAKQMSWD LLVYKYMMYV YDKWIFHIPL 240
  241 YFTVDYVSER LRSEVDFTTE ANNSEHAREG VEETDYLRDK IYIPKVYKEI SGKRVMVTEW 300
  301 ADGIPLYDQT ALSEAGMSKK EILTNLFRFL AFQMFHSKQV HCDPHPGNIL VRKNQAGLCQ 360
  361 TVILDHGLYV FESEKFRKEF ALLFTAAYSL DKKSILQVMD AWGIGQPELF ANRMLNIPMD 420
  421 EEQPHTGEKI ISKKEAFQQQ LAERKKFIGF LQDCTRLPKE LLMLGRCLML IQKNNQNFGY 480
  481 PVNSIAVMAK VADKYTTDKP SPTWYQRLLS PIFWVFQHLF YPGNFRLPEL TNDKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.0
Match:	2acxA
Description:	No description for 2acxA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits