YRC Public Data Repository - Protein Structure Prediction

Protein:	erv25
Organism:	Schizosaccharomyces pombe
Length:	216 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for erv25.

Description	E-value	Query Range	Subject Range
gi\|109066641, gi... - gi\|109066643\|ref\|XP_001091631.1\| PREDICTED: similar to transmembrane emp24 protein transport domain ...	228.0	[0..1]	[215..9]
gi\|149047669, gi... - gi\|27697481\|ref\|XP_223611.1\| PREDICTED: similar to transmembrane emp24 protein transport domain cont...	223.0	[0..1]	[215..9]
TMED4_MOUSE - Transmembrane emp24 domain-containing protein 4 OS=Mus musculus GN=Tmed4 PE=1 SV=1	223.0	[0..1]	[215..9]
TMED4 - transmembrane emp24 protein transport domain containing 4 gi\|117645226, gi... - gi\|117646248\|emb\|CAL38591.1\| hypothetical protein [synthetic construct], gi\|117645226\|emb\|CAL38079.1...	220.0	[0..15]	[215..23]
gi\|114613157 - gi\|114613157\|ref\|XP_001145929.1\| PREDICTED: transmembrane emp24 protein transport domain containing ...	219.0	[0..15]	[215..23]
gi\|125852895, gi... - gi\|50344924\|ref\|NP_001002134.1\| transmembrane emp24 protein transport domain containing 4 [Danio rer...	215.0	[0..2]	[215..1]

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Predicted Domain #1

Region A:
Residues: [1-216]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMVSLKSSLF FMLALLTVVH ALNFDIPAKT NPEPFCLREY VGEKNLVIVN LKTTGNMGDG  60
   61 QTLSMMITDS SGNTHSSIQN VLGEKSVAFD VDASAMLDIC FLNTLTPGAI ESEHKKRSVK 120
  121 LEFTVGADAD DYSSLQKANN LEPVEADIRR ARDFIEEIKG KIYYLQAREA RFRNTNESTN 180
  181 ERVKNFAYLT FISLFVLVIW QILYLRSFFQ RKHLIP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits