YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC2C4.08
Organism:	Schizosaccharomyces pombe
Length:	243 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC2C4.08.

Description	E-value	Query Range	Subject Range
gi\|152976184, gi... - gi\|89203212\|ref\|ZP_01181903.1\| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha subunit...	202.0	[0..1]	[237..340]
DPO3_BACHD - DNA polymerase III polC-type OS=Bacillus halodurans GN=polC PE=3 SV=1 DPO3_BACHD - DNA polymerase III PolC-type OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / J...	200.0	[0..1]	[242..341]
gi\|56419793, gi\|... - gi\|56419793\|ref\|YP_147111.1\| DNA polymerase III PolC [Geobacillus kaustophilus HTA426], gi\|56379635\|...	194.0	[0..1]	[240..351]
gi\|125973511, gi... - gi\|67917180\|ref\|ZP_00510847.1\| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha subunit...	193.0	[0..1]	[242..352]
gi\|89098599, gi\|... - gi\|89098599\|ref\|ZP_01171481.1\| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911], gi\|8908...	192.0	[0..1]	[237..347]
gi\|163863752, gi... - gi\|89208601\|ref\|ZP_01187099.1\| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha subunit...	189.0	[0..1]	[237..340]
DPO3_STAAR - DNA polymerase III PolC-type OS=Staphylococcus aureus (strain MRSA252) GN=polC PE=3 SV=1	189.0	[0..1]	[240..344]
DPO3_BACSU - DNA polymerase III polC-type OS=Bacillus subtilis GN=polC PE=1 SV=2 gi\|221318783 - gi\|221318783\|ref\|ZP_03600077.1\| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. JH64... gi\|221313860 - gi\|221313860\|ref\|ZP_03595665.1\| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. NCIB... gi\|221323055 - gi\|221323055\|ref\|ZP_03604349.1\| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. SMY] DPO3_BACSU - DNA polymerase III PolC-type OS=Bacillus subtilis (strain 168) GN=polC PE=1 SV=2	189.0	[0..1]	[241..343]
gi\|90583510, gi\|... - gi\|90583510\|ref\|ZP_01239266.1\| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha subunit... gi\|90586568, gi\|... - gi\|90586568\|ref\|ZP_01242262.1\| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha subunit... DPO3_STAAM - DNA polymerase III PolC-type OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=polC PE=3 SV=1 gi\|255006051 - gi\|255006051\|ref\|ZP_05144652.2\| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus Mu50-om... gi\|253315620 - gi\|253315620\|ref\|ZP_04838833.1\| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str. CF... gi\|25312569 - pir\|\|C89900 DNA polymerase III, alpha chain PolC-type [imported] - Staphylococcus aureus (strain N31... DPO3_STAAN - DNA polymerase III PolC-type OS=Staphylococcus aureus (strain N315) GN=polC PE=1 SV=1 DPO3_STAA1 - DNA polymerase III PolC-type OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=polC PE=3 SV=1	189.0	[0..1]	[240..344]
gi\|228660107, gi... - gi\|229123331\|ref\|ZP_04252535.1\| DNA polymerase III polC-type [Bacillus cereus 95/8201], gi\|228660107... gi\|21401801, gi\|... - gi\|65321145\|ref\|ZP_00394104.1\| COG2176: DNA polymerase III, alpha subunit (gram-positive type) [Baci... gi\|228947537, gi... - gi\|228947537\|ref\|ZP_04109827.1\| DNA polymerase III polC-type [Bacillus thuringiensis serovar monterr... gi\|227813274, gi... - gi\|227813274\|ref\|YP_002813283.1\| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus ant... gi\|165872624, gi... - gi\|165872624\|ref\|ZP_02217255.1\| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anth... gi\|170687849, gi... - gi\|170687849\|ref\|ZP_02879063.1\| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anth... gi\|170128318, gi... - gi\|170706900\|ref\|ZP_02897358.1\| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anth... gi\|49180595, gi\|... - gi\|49186668\|ref\|YP_029920.1\| DNA polymerase III PolC [Bacillus anthracis str. Sterne], gi\|49180595\|g... gi\|52141670, gi\|... - gi\|52141670\|ref\|YP_085159.1\| DNA polymerase III PolC [Bacillus cereus E33L], gi\|51975139\|gb\|AAU16689... gi\|30258465, gi\|... - gi\|30263821\|ref\|NP_846198.1\| DNA polymerase III PolC [Bacillus anthracis str. Ames], gi\|30258465\|gb\|... gi\|47504393, gi\|... - gi\|47529245\|ref\|YP_020594.1\| DNA polymerase III PolC [Bacillus anthracis str. 'Ames Ancestor'], gi\|4... gi\|190568456, gi... - gi\|190568456\|ref\|ZP_03021363.1\| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anth... gi\|196042171, gi... - gi\|196042171\|ref\|ZP_03109454.1\| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cere... gi\|218904946, gi... - gi\|218904946\|ref\|YP_002452780.1\| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cer... gi\|254759330 - gi\|254759330\|ref\|ZP_05211355.1\| DNA polymerase III PolC [Bacillus anthracis str. Australia 94] gi\|254756009 - gi\|254756009\|ref\|ZP_05208040.1\| DNA polymerase III PolC [Bacillus anthracis str. Vollum] gi\|254721996 - gi\|254721996\|ref\|ZP_05183785.1\| DNA polymerase III PolC [Bacillus anthracis str. A1055] gi\|254683475 - gi\|254683475\|ref\|ZP_05147335.1\| DNA polymerase III PolC [Bacillus anthracis str. CNEVA-9066] gi\|229601637, gi... - gi\|229601637\|ref\|YP_002868056.1\| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus ant...	189.0	[0..1]	[237..340]

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Predicted Domain #1

Region A:
Residues: [1-243]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRLQAKKAV NVSRHEQKRI RYKLTPEEVK AERKERKRRA AIQRAEKKLI RAKGEALVAF  60
   61 QAVSNPSCNF LVIDFEAYEF NQKIITEAGI TMRINGEWDY HHYRIKNFLH LRNGRFVPDE 120
  121 ADNFQFGDSK IVTKIAFISI LKKILKTPNL HLVGHGVENE IKYANVLGIP IPKDVTVLDT 180
  181 QNVFSFFQSL FLKEISNSNN ISLAKMLTHL NIRAFCLHNA GNDARYTSEA LREMTNKFTL 240
  241 SNF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.69897
Match:	1zbuA
Description:	No description for 1zbuA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits