YRC Public Data Repository - Protein Structure Prediction

Protein:	apl6
Organism:	Schizosaccharomyces pombe
Length:	745 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for apl6.

Description	E-value	Query Range	Subject Range
gi\|114668034 - gi\|114668034\|ref\|XP_001174142.1\| PREDICTED: adaptor-related protein complex 2, beta 1 subunit isofor...	381.0	[0..31]	[722..11]
gi\|73966787 - gi\|73966787\|ref\|XP_867764.1\| PREDICTED: similar to Adapter-related protein complex 2 beta 1 subunit ...	381.0	[0..31]	[722..11]
AP2B1 - adaptor-related protein complex 2, beta 1 subunit gi\|149724034 - gi\|149724034\|ref\|XP_001503976.1\| PREDICTED: similar to beta-chain clathrin associated protein comple... AP2B1_RAT - AP-2 complex subunit beta OS=Rattus norvegicus GN=Ap2b1 PE=1 SV=1 gi\|73966773 - gi\|73966773\|ref\|XP_867698.1\| PREDICTED: similar to Adapter-related protein complex 2 beta 1 subunit ... gi\|114668040, gi... - gi\|114668042\|ref\|XP_001174162.1\| PREDICTED: adaptor-related protein complex 2, beta 1 subunit isofor... gi\|168277614 - gi\|168277614\|dbj\|BAG10785.1\| AP-2 complex subunit beta-1 [synthetic construct]	379.0	[0..31]	[722..11]
AP2B1_MOUSE - AP-2 complex subunit beta OS=Mus musculus GN=Ap2b1 PE=1 SV=1	378.0	[0..31]	[722..11]

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Predicted Domain #1

Region A:
Residues: [1-667]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNLSFFQTL SGLAENAKQI AKSSSLSFEE NELSHSDLLR LLNSNSDAGK LEAINFILAQ  60
   61 MMHGENMSLY FPDVVKLVAS ENPEIRRLVH IYLLQYAEFN PDLALLSVNT VQKTLYDKNP 120
  121 LTRSTAIRVM SSIRVPAING IVLLAIQQCI TDTADRVRQS AALAITKCYS LDPSYKSQLE 180
  181 EHIKTLLSDN SPIVVPAALF TFEVVCPEKL EIIHPYYHRI CTLFPQMNDW DKVVALKTLV 240
  241 RYARLTLPEP STPSTHSDLK ELLESIKSCF FSLLPSTIIA GARAFYYLAP SNQMHLIVEP 300
  301 LLQLLLEKPI VRTTTLRYIS QIVYKTPELF KNHIKSFFLI ASDSDDTCLL KINILSRLLD 360
  361 AQNSSQILPE LLYYINSHPN PSVASTAVKA LGDFASANIS MAPSCLNTLL LLLKSHNSLI 420
  421 VTEAASSLRL LIHNDPKEIY LQYLAATYET LEVPRAKSVT LWLISEHILI IPRLVPDVLR 480
  481 IAVKTFADET LEVKYQILEL SVRLYVLSHS EEKQNDLESR DDVVSLLFNY VLSLIHFDMS 540
  541 YDLRDRARFY KELASTPSSE FTRRIVLESK GNSQKEIIAS RDYCIGTASL CLNEDVMGYE 600
  601 PIPNWADVSD LPPDSVREGI KDVLPINPHT GNIYSNNSPG VKALSSDNFK RDFGDTNAIN 660
  661 RPKFVGQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	86.69897
Match:	1w63B
Description:	AP1 clathrin adaptor core
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [668-745]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QTLEEFYASE TSESSEGEYE TSTSESEDEE TDDTSQEEDN EKNSTPDEDT ENNNTSSIST  60
   61 KSIMDRPLTE PEPNYWQS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.30103
Match:	1iu1A
Description:	Gamma1-adaptin domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits