YRC Public Data Repository - Protein Structure Prediction

Protein:	pgp2
Organism:	Schizosaccharomyces pombe
Length:	346 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pgp2.

Description	E-value	Query Range	Subject Range
OSGEP_XENLA - Probable tRNA N6-adenosine threonylcarbamoyltransferase OS=Xenopus laevis GN=osgep PE=2 SV=1	334.0	[0..6]	[346..3]
gi\|111305744, gi... - gi\|62859377\|ref\|NP_001016112.1\| O-sialoglycoprotein endopeptidase [Xenopus (Silurana) tropicalis], g...	333.0	[0..6]	[346..3]
OSGEP_RAT - Probable tRNA N6-adenosine threonylcarbamoyltransferase OS=Rattus norvegicus GN=Osgep PE=2 SV=2	333.0	[0..7]	[346..4]
OSGEP_BOVIN - Probable tRNA N6-adenosine threonylcarbamoyltransferase OS=Bos taurus GN=OSGEP PE=2 SV=1	331.0	[0..7]	[346..4]
gi\|109082626 - gi\|109082626\|ref\|XP_001088971.1\| PREDICTED: O-sialoglycoprotein endopeptidase [Macaca mulatta]	330.0	[0..7]	[346..4]
gi\|88820019, gi\|... - gi\|88858402\|ref\|ZP_01133044.1\| hypothetical protein PTD2_13469 [Pseudoalteromonas tunicata D2], gi\|8...	330.0	[0..5]	[341..1]
gi\|84662768, gi\|... - gi\|84662768\|ref\|NP_598437.2\| O-sialoglycoprotein endopeptidase [Mus musculus], gi\|26340686\|dbj\|BAC34...	330.0	[0..7]	[346..4]
gi\|114651752 - gi\|114651752\|ref\|XP_001139005.1\| PREDICTED: O-sialoglycoprotein endopeptidase isoform 1 [Pan troglod... gi\|123996261, gi... - gi\|208966974\|dbj\|BAG73501.1\| O-sialoglycoprotein endopeptidase [synthetic construct], gi\|157928886\|g... OSGEP - O-sialoglycoprotein endopeptidase	330.0	[0..7]	[346..4]
TSAD_HISS2 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Histophilus somni (strain 2336) GN=tsaD PE=3 SV=1	329.0	[0..5]	[342..1]

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Predicted Domain #1

Region A:
Residues: [1-346]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKPLIALGL EGSANKLGVG IILHDTNGSA KILANVRHTY ITPPGQGFLP SDTAKHHRAW  60
   61 IIPLIKQAFA EAKISFKDID CICFTKGPGI GAPLNSVALC ARMLSLIHKK PLVAVNHCIG 120
  121 HIEMGREITG AQNPVVLYVS GGNTQVIAYS EKKYRIFGET LDIAIGNCLD RFARIIGLSN 180
  181 APSPGYNIMQ EAKKGKRFIE LPYTVKGMDC SFSGLLSGVE AAATELLDPK NPSSVTKQDL 240
  241 CYSLQETGFA MLVEITERAM AHIRADSVLI VGGVGCNERL QQMMAEMSSD RGADVFSTDE 300
  301 RFCIDNGIMI AQAGLLAYKT GDRCAVAEST ITQRYRTDDV YISWRD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	80.39794
Match:	2ivnA
Description:	No description for 2ivnA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits