YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC16E9.10c
Organism:	Schizosaccharomyces pombe
Length:	779 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC16E9.10c.

Description	E-value	Query Range	Subject Range
CD48D_ARATH - Cell division control protein 48 homolog D OS=Arabidopsis thaliana GN=CDC48D PE=1 SV=1	527.0	[0..26]	[775..62]
CDC48_SOYBN - Cell division cycle protein 48 homolog OS=Glycine max GN=CDC48 PE=2 SV=1	526.0	[0..26]	[775..62]
CDC48_CAPAN - Cell division cycle protein 48 homolog OS=Capsicum annuum GN=CAFP PE=2 SV=1	522.0	[0..26]	[775..62]
gi\|215704352, gi... - gi\|215704711\|dbj\|BAG94339.1\| unnamed protein product [Oryza sativa Japonica Group], gi\|215704637\|dbj... gi\|125542437 - gi\|125542437\|gb\|EAY88576.1\| hypothetical protein OsI_10049 [Oryza sativa Indica Group]	522.0	[0..27]	[775..65]
gi\|98962497 - gi\|98962497\|gb\|ABF59516.1\| putative spindle disassembly related protein CDC48 [Nicotiana tabacum]	522.0	[0..26]	[775..62]
gi\|27374245, gi\|... - gi\|27374245\|gb\|AAO01004.1\| CG2331-PA [Drosophila erecta], gi\|194858161\|ref\|XP_001969115.1\| TER94 [Dr...	519.0	[0..3]	[775..22]

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Predicted Domain #1

Region A:
Residues: [1-779]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRSGTSLSR DLERKIHERL VSLKDTIQQT EIEEWPVSTR RAIQFVQERD MSLRRIKKPI  60
   61 LEKVVEKVLD TLKAEVEEKL ASSQDLVLVD SDMEEQSDSN LMEVKDTNVI NKSITSLWSS 120
  121 PNLKEIDGED EKKSVGQESI TGSAKRKDRR SKTNGSKRQK AEANREPPSD ISLSDIGGLD 180
  181 DCINELLELV AMPIKHPEVY QYTGIHPPRG VLLHGPPGCG KTMLANALAN ELGVPFISIS 240
  241 APSIVSGMSG ESEKKVREVF EEAKSLAPCL MFIDEIDAVT PKRESAQREM ERRIVAQFLT 300
  301 CMDELSFEKT DGKPVLVIGA TNRPDSLDSA LRRAGRFDRE ICLTVPSQDA REKILRTMAK 360
  361 GLKLSGDFDF RQLAKQTPGY VGADLKALTA AAGIIAIKRI FNEISPLNKL DLNSDPRFNE 420
  421 LDSDMALDSN DSLPLDHSSI IQRYLNAHPD PLSPEELEPL AICPQDFIEA LAKVQPSSKR 480
  481 EGFATVPGVS WNNIGALKSI RVELQMAIVQ PIKRPELYQS VGISAPTGVL LWGPPGCGKT 540
  541 LLAKAVANES KANFISIRGP ELLNKYVGES ERAVRQVFLR ARASSPCVIF FDELDAMVPR 600
  601 RDDSLSEASS RVVNTLLTEL DGLSDRSGVY VIAATNRPDI IDPAMLRPGR LDKTLLVDLP 660
  661 DAHERVEILK TLTKQTPLHE EVNLDVLGRD ERCSNFSGAD LAALVREAAV TALRSAVFAD 720
  721 IASNEPEITQ HSALEPIRVT NADFELAFKN IKPSVSDRDR QKYQRLAKRW SSASTNDAD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	145.0
Match:	1oz4A
Description:	VCP/p97
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits