YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC458.06
Organism:	Schizosaccharomyces pombe
Length:	364 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC458.06.

Description	E-value	Query Range	Subject Range
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	331.0	[0..2]	[363..1257]
gi\|75701503, gi\|... - gi\|75907778\|ref\|YP_322074.1\| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...	328.0	[0..3]	[362..1172]
gi\|37523925, gi\|... - gi\|37523925\|ref\|NP_927302.1\| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi\|35214...	326.0	[0..4]	[362..782]
gi\|17225208 - gi\|17225208\|gb\|AAL37300.1\|AF323584_1 beta transducin-like protein HET-E2C*40 [Podospora anserina]	316.0	[0..3]	[362..885]
gi\|115443476, gi... - gi\|115443476\|ref\|XP_001218545.1\| hypothetical protein ATEG_09923 [Aspergillus terreus NIH2624], gi\|1...	312.0	[0..2]	[362..649]

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Predicted Domain #1

Region A:
Residues: [1-364]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTINTVSLN QDASCMSVAL DTGYKIFQIN PLKLRAQRQF NDGGLSIVKM LFRSNVLLLV  60
   61 GGGGNPKYAP NKLIVWDDVK ERPVKELELN FEIKGICFDG KLLAIATASK LFLYQFGNNL 120
  121 KLQRCLDTQN PKGLCAMVTT VEKTAIVFPS RKVGQLQILF LFKDHMNTSI VPAHDSEISC 180
  181 LGISKTGSKI ASSSTNGTLI RIWNSETGEK ICEFRRGYQH TAVCQLAFSP DELLLACASK 240
  241 KETLHIFSLH GSPNTIRQLT SEEPYEEASE FKSSTTEPRQ THWKRKLLKL IDSGKRAHWR 300
  301 IQLYQSNPVL LHWLDEMTIL ICYKDAAYQK LKLTIEESSK SVEHANQHVC FHYDYTLEAD 360
  361 GSLC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.0
Match:	2ovpB
Description:	No description for 2ovpB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits