YRC Public Data Repository - Protein Structure Prediction

Protein:	cox18
Organism:	Schizosaccharomyces pombe
Length:	202 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cox18.

Description	E-value	Query Range	Subject Range
gi\|91798521, gi\|... - gi\|92115431\|ref\|YP_575359.1\| putative inner membrane protein translocase component YidC [Chromohalob...	246.0	[0..1]	[202..367]
gi\|84318222 - gi\|84318222\|ref\|ZP_00966649.1\| COG0706: Preprotein translocase subunit YidC [Pseudomonas aeruginosa ...	244.0	[0..1]	[202..370]
YIDC_PSEA7 - Membrane protein insertase YidC OS=Pseudomonas aeruginosa (strain PA7) GN=yidC PE=3 SV=1	243.0	[0..1]	[202..377]
YIDC_PSEAB - Membrane protein insertase YidC OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=yidC PE=3 SV=1 YIDC_PSEA8 - Membrane protein insertase YidC OS=Pseudomonas aeruginosa (strain LESB58) GN=yidC PE=3 SV=1	242.0	[0..1]	[202..377]
YIDC_PSEAE - Membrane protein insertase YidC OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /... OXAA_PSEAE - Inner membrane protein oxaA OS=Pseudomonas aeruginosa GN=oxaA PE=3 SV=1	242.0	[0..1]	[202..377]
gi\|107104669 - gi\|107104669\|ref\|ZP_01368587.1\| hypothetical protein PaerPA_01005748 [Pseudomonas aeruginosa PACS2]	242.0	[0..1]	[202..377]
YIDC_CUPNH - Membrane protein insertase YidC OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier ...	242.0	[0..1]	[202..350]
OXAA_RALSO - Inner membrane protein oxaA OS=Ralstonia solanacearum GN=oxaA PE=3 SV=1 YIDC_RALSO - Membrane protein insertase YidC OS=Ralstonia solanacearum (strain GMI1000) GN=yidC PE=3 SV=1	241.0	[0..1]	[202..349]
YIDC_PSEPU - Membrane protein insertase YidC OS=Pseudomonas putida GN=yidC PE=3 SV=1 tr\|I7C0X3\|I7C0X3... - Membrane protein insertase YidC OS=Pseudomonas putida (strain DOT-T1E) GN=yidC PE=3 SV=1 YIDC_PSEPK - Membrane protein insertase YidC OS=Pseudomonas putida (strain KT2440) GN=yidC PE=3 SV=1 tr\|E4R9L3\|E4R9L3... - Membrane protein insertase YidC OS=Pseudomonas putida (strain BIRD-1) GN=oxaA PE=3 SV=1	241.0	[0..1]	[202..357]
YIDC_PSEP1 - Membrane protein insertase YidC OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=yidC PE=3 SV=1	241.0	[0..1]	[202..357]

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Predicted Domain #1

Region A:
Residues: [1-202]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQTLIGVHS YMPWCYEIPA MAIFLRSTIT LPIAIASLKT ARRFVQVQPL IKEAKKRCRT  60
   61 NTDFRTVRKK LYKRFNCHPL MIYALPITQL PLFAFASYQL RQAVDVCPES MSTEGMLWFT 120
  121 DLTLPDPHGV LPAVLAVTYL TNMSILKRPS DSRLLKIFNT AGIMSAFFVS FMAFKTSTAL 180
  181 SLYWTTSAIY SLVQNVALRK LL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	8.119186
Match:	PF02096.11
Description:	No description for PF02096.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits