YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC144.02
Organism:	Schizosaccharomyces pombe
Length:	249 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC144.02.

Description	E-value	Query Range	Subject Range
gi\|73947291 - gi\|73947291\|ref\|XP_541354.2\| PREDICTED: similar to Zinc finger protein 606 (Zinc finger protein 328)...	314.0	[0..3]	[248..2553]
gi\|68365042 - gi\|68365042\|ref\|XP_690837.1\| PREDICTED: similar to zinc finger protein 135 (clone pHZ-17) [Danio rer...	282.0	[0..2]	[248..54]
gi\|76644053 - gi\|76644053\|ref\|XP_592867.2\| PREDICTED: similar to zinc finger protein 287 [Bos taurus]	281.0	[0..2]	[247..753]
gi\|114626840 - gi\|114626840\|ref\|XP_528435.2\| PREDICTED: zinc finger protein 79 (pT7) [Pan troglodytes]	280.0	[0..2]	[248..392]
gi\|109001733 - gi\|109001733\|ref\|XP_001107866.1\| PREDICTED: similar to zinc finger protein 31 isoform 2 [Macaca mula...	268.0	[0..2]	[247..714]
gi\|74141024, gi\|... - gi\|74141024\|dbj\|BAE22090.1\| unnamed protein product [Mus musculus], gi\|46852149\|ref\|NP_631880.2\| zin... gi\|189442055 - gi\|189442055\|gb\|AAI67172.1\| Zinc finger protein 192 [synthetic construct]	261.0	[0..2]	[248..336]

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Predicted Domain #1

Region A:
Residues: [1-249]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSISSDTSGS VPGSPIDLEP ESETICHWQS CEQDLLTLDN LVHHIHNGTT SNLRLISNIN  60
   61 SILDHIGNRR PKYTCEWDDC PRKGMVQTSR FALVAHLRSH TGEKPFICSV PECDRSFTRS 120
  121 DALAKHMRTV HEADTLRPSD PIPKAHPMHP QNVANAMVQS AREARAQQQM HGVGNTNEDV 180
  181 ENWLDAASMP KTSHDMYRLQ KRKLQWVKEE RTMLANHLEA LERKLIDARN RKEKILNEIV 240
  241 KQVDPSISR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.0
Match:	2i13A
Description:	No description for 2i13A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits