YRC Public Data Repository - Protein Structure Prediction

Protein:	mug135
Organism:	Schizosaccharomyces pombe
Length:	357 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mug135.

Description	E-value	Query Range	Subject Range
gi\|68388302 - gi\|68388302\|ref\|XP_696268.1\| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]	139.0	[0..1]	[337..2310]
gi\|76647955 - gi\|76647955\|ref\|XP_584975.2\| PREDICTED: similar to CDC42-binding protein kinase beta [Bos taurus]	112.0	[0..28]	[338..711]
gi\|9800488, gi\|1... - gi\|9800488\|gb\|AAF99315.1\|AF272034_1 fast myosin heavy chain isoform 3 [Gallus gallus], gi\|165973976\|...	107.0	[0..1]	[298..1317]
gi\|94365901, gi\|... - gi\|94365901\|ref\|XP_999421.1\| PREDICTED: similar to CDC42-binding protein kinase alpha isoform 10 [Mu...	107.0	[0..20]	[339..442]
gi\|109491003 - gi\|109491003\|ref\|XP_001078049.1\| PREDICTED: similar to myosin, heavy polypeptide 8, skeletal muscle,...	107.0	[0..1]	[338..1261]
gi\|4249699 - gi\|4249699\|gb\|AAD13771.1\| myosin heavy chain [Rana catesbeiana]	107.0	[0..2]	[321..93]

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Predicted Domain #1

Region A:
Residues: [1-357]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEEDNRLNE LFANDLGVQP PCERSLKEGR RFLNDFEIAA KKKLLELERK ALEDKEKNLN  60
   61 FVVESERTLF NSKKRAFDND ECYNDRCKLF RGIVNEWGRS ERTLDSLDEP PAWFRREMGE 120
  121 WKKAREEDKA EWKKAREEDK AEWKKAREED KAEWKKAREE DKAEWKKARE EDKAEWKKAR 180
  181 EEDKEWRNSM DEWRKSMDEW RKSMDEWRKS MDEWRKSTDE WRKSTDERLE NLLNIVREIL 240
  241 DVQRDMRNDL SNLTRKVDRM DMRLSRNNNM IMRSFAQPIT EVPFFNGDIP DPNLPRITRI 300
  301 EDIDSLSEEN CTRYLKGYGV SYDENDQSLW KRQLAKAVGL TAAYDESYTF SPFSSSE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.045757
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits