YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC646.07c
Organism:	Schizosaccharomyces pombe
Length:	295 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC646.07c.

Description	E-value	Query Range	Subject Range
gi\|60551245 - gi\|60551245\|gb\|AAH91002.1\| Gpsn2 protein [Xenopus tropicalis]	332.0	[0..2]	[295..43]
gi\|256994, gi\|21... - gi\|256994\|gb\|AAB23534.1\| SC2 [Rattus sp.], gi\|2144098\|pir\|\|I56573 synaptic glycoprotein SC2 [importe... TECR_RAT - Very-long-chain enoyl-CoA reductase OS=Rattus norvegicus GN=Tecr PE=1 SV=1	327.0	[0..2]	[295..5]
gi\|109123711 - gi\|109123711\|ref\|XP_001112313.1\| PREDICTED: glycoprotein, synaptic 2 [Macaca mulatta]	327.0	[0..2]	[295..20]
TECR_MOUSE - Very-long-chain enoyl-CoA reductase OS=Mus musculus GN=Tecr PE=1 SV=1	326.0	[0..2]	[295..5]
gi\|13111809 - gi\|13111809\|gb\|AAH00174.2\|AAH00174 Unknown (protein for IMAGE:2901253) [Homo sapiens]	326.0	[0..2]	[295..1]
TECR_BOVIN - Very-long-chain enoyl-CoA reductase OS=Bos taurus GN=TECR PE=2 SV=1	325.0	[0..2]	[295..5]
gi\|60653629, gi\|... - gi\|60653631\|gb\|AAX29509.1\| glycoprotein synaptic 2 [synthetic construct], gi\|60653629\|gb\|AAX29508.1\|...	325.0	[0..2]	[295..5]
gi\|73986266 - gi\|73986266\|ref\|XP_852850.1\| PREDICTED: similar to Synaptic glycoprotein SC2 isoform 2 [Canis famili...	325.0	[0..2]	[295..5]

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Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSITLSSRGR KIRKLPKSLE FPLDGSIDKL RDEVSSVTRL PVERLRFSTA DGTTLLPNTT  60
   61 LRKYGVGPGA TIWVKDLGPQ IGWRTVFMIE YLGPLVI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.69897
Match:	2dzjA
Description:	No description for 2dzjA was found.

Predicted Domain #2

Region A:
Residues: [98-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HLFFILNYKW IYRKDYNLCL NQKIAFVLVM LHFMKREYES IFVHRFS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [145-295]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LATMPLRNIF KNCAHYHLLS GLFLAYFIYG PWHANDYIKP NHLLFLIVGW AFAVLSNFRT  60
   61 HIILRDLRPA GSKKRVIPTG YGFNLVSFPN YFFESLGWLF FALLTKSWAS WIFLFVGSAQ 120
  121 MFVWAKKKHA RYLKEFPNYP RSRKIMIPFF L

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	84.387216
Match:	PF02544.7
Description:	No description for PF02544.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits