YRC Public Data Repository - Protein Structure Prediction

Protein:	mrp17
Organism:	Schizosaccharomyces pombe
Length:	109 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mrp17.

Description	E-value	Query Range	Subject Range
gi\|33566505 - gi\|33566505\|emb\|CAE37761.1\| 30s ribosomal protein s6 [Bordetella parapertussis] gi\|33597054 - gi\|33597054\|ref\|NP_884697.1\| 30S ribosomal protein S6 [Bordetella parapertussis 12822] gi\|33568499, gi\|... - gi\|33600899\|ref\|NP_888459.1\| 30S ribosomal protein S6 [Bordetella bronchiseptica RB50], gi\|33568499\|...	126.0	[0..2]	[104..35]
gi\|239999183 - gi\|239999183\|ref\|ZP_04719107.1\| 30S ribosomal protein S6 [Neisseria gonorrhoeae 35/02] gi\|240118216 - gi\|240118216\|ref\|ZP_04732278.1\| 30S ribosomal protein S6 [Neisseria gonorrhoeae PID1] RS6_NEIG1 - 30S ribosomal protein S6 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=rpsF PE=3 SV=1 gi\|240123764 - gi\|240123764\|ref\|ZP_04736720.1\| 30S ribosomal protein S6 [Neisseria gonorrhoeae PID332] gi\|240016351 - gi\|240016351\|ref\|ZP_04722891.1\| 30S ribosomal protein S6 [Neisseria gonorrhoeae FA6140] gi\|240115918 - gi\|240115918\|ref\|ZP_04729980.1\| 30S ribosomal protein S6 [Neisseria gonorrhoeae PID18] gi\|240125955 - gi\|240125955\|ref\|ZP_04738841.1\| 30S ribosomal protein S6 [Neisseria gonorrhoeae SK-92-679] RS6_NEIGO - 30S ribosomal protein S6 OS=Neisseria gonorrhoeae GN=rpsF PE=3 SV=1 gi\|254493954, gi... - gi\|254493954\|ref\|ZP_05107125.1\| 30S ribosomal protein S6 [Neisseria gonorrhoeae 1291], gi\|226512994\|...	124.0	[0..2]	[107..4]
RS6_NEIM0 - 30S ribosomal protein S6 OS=Neisseria meningitidis serogroup C (strain 053442) GN=rpsF PE=3 SV=1 gi\|254671746 - gi\|254671746\|emb\|CBA09568.1\| 30S ribosomal protein S6 [Neisseria meningitidis alpha153] RS6_NEIMF - 30S ribosomal protein S6 OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / D... gi\|254668664, gi... - gi\|254805122\|ref\|YP_003083343.1\| 30S ribosomal protein S6 [Neisseria meningitidis], gi\|254668664\|emb... RS6_NEIMA - 30S ribosomal protein S6 OS=Neisseria meningitidis serogroup A GN=rpsF PE=3 SV=1 gi\|11276540 - gi\|11276540\|pir\|\|D81845 30S ribosomal protein S6 NMA1537 [imported] - Neisseria meningitidis (strain... RS6_NEIMA - 30S ribosomal protein S6 OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=rpsF ...	123.0	[0..2]	[107..4]
RS6_DECAR - 30S ribosomal protein S6 OS=Dechloromonas aromatica (strain RCB) GN=rpsF PE=3 SV=1	123.0	[0..2]	[106..4]
RS6_AROAE - 30S ribosomal protein S6 OS=Aromatoleum aromaticum (strain EbN1) GN=rpsF PE=3 SV=1	123.0	[0..2]	[106..4]
RS6_NEIMB - 30S ribosomal protein S6 OS=Neisseria meningitidis serogroup B GN=rpsF PE=3 SV=1 gi\|11276542 - pir\|\|B81097 30S ribosomal protein S6 NMB1323 [imported] - Neisseria meningitidis (strain MC58 serogr... RS6_NEIMB - 30S ribosomal protein S6 OS=Neisseria meningitidis serogroup B (strain MC58) GN=rpsF PE=3 SV=1	122.0	[0..2]	[107..4]
RS6_BURTA - 30S ribosomal protein S6 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP ... RS6_BURP1 - 30S ribosomal protein S6 OS=Burkholderia pseudomallei (strain 1710b) GN=rpsF PE=3 SV=1 gi\|85064557 - gi\|85064557\|ref\|ZP_01025410.1\| COG0360: Ribosomal protein S6 [Burkholderia mallei 10229] gi\|254358246, gi... - gi\|87316161\|ref\|ZP_01097181.1\| COG0360: Ribosomal protein S6 [Burkholderia mallei 2002721280], gi\|25... gi\|254179490, gi... - gi\|99913246\|ref\|ZP_01319904.1\| hypothetical protein Bpse1_03000804 [Burkholderia pseudomallei 1655],... gi\|254258001, gi... - gi\|90290356\|ref\|ZP_01210019.1\| hypothetical protein Bpse17_02004971 [Burkholderia pseudomallei 1710a... gi\|238520890, gi... - gi\|67640204\|ref\|ZP_00439019.1\| 30S ribosomal protein S6 [Burkholderia mallei GB8 horse 4], gi\|238520... RS6_BURM7 - 30S ribosomal protein S6 OS=Burkholderia mallei (strain NCTC 10247) GN=rpsF PE=3 SV=1 gi\|157936797, gi... - gi\|67755452\|ref\|ZP_00494346.1\| COG0360: Ribosomal protein S6 [Burkholderia pseudomallei Pasteur], gi... gi\|169654724, gi... - gi\|67763035\|ref\|ZP_00501732.1\| COG0360: Ribosomal protein S6 [Burkholderia pseudomallei S13], gi\|254... RS6_BURP6 - 30S ribosomal protein S6 OS=Burkholderia pseudomallei (strain 668) GN=rpsF PE=3 SV=1 RS6_BURMS - 30S ribosomal protein S6 OS=Burkholderia mallei (strain SAVP1) GN=rpsF PE=3 SV=1 RS6_BURP0 - 30S ribosomal protein S6 OS=Burkholderia pseudomallei (strain 1106a) GN=rpsF PE=3 SV=1 RS6_BURMA - 30S ribosomal protein S6 OS=Burkholderia mallei GN=rpsF PE=3 SV=1 gi\|82536153, gi\|... - gi\|82536153\|ref\|ZP_00895162.1\| hypothetical protein Bpse110_02002637 [Burkholderia pseudomallei 1106... RS6_BURPS - 30S ribosomal protein S6 OS=Burkholderia pseudomallei GN=rpsF PE=3 SV=1 gi\|83680026, gi\|... - gi\|83680026\|ref\|ZP_00941735.1\| COG0360: Ribosomal protein S6 [Burkholderia pseudomallei 406e], gi\|25... gi\|67635449, gi\|... - gi\|67635449\|ref\|ZP_00434405.1\| COG0360: Ribosomal protein S6 [Burkholderia mallei 10399], gi\|1009149... gi\|167002904 - gi\|167002904\|ref\|ZP_02268694.1\| 30S ribosomal protein S6 [Burkholderia mallei PRL-20] gi\|83620445, gi\|... - gi\|83620445\|ref\|ZP_00930864.1\| COG0360: Ribosomal protein S6 [Burkholderia mallei FMH], gi\|254200006... gi\|254206339, gi... - gi\|83625723\|ref\|ZP_00935952.1\| COG0360: Ribosomal protein S6 [Burkholderia mallei JHU], gi\|254206339... RS6_BURPS - 30S ribosomal protein S6 OS=Burkholderia pseudomallei (strain K96243) GN=rpsF PE=3 SV=1 RS6_BURMA - 30S ribosomal protein S6 OS=Burkholderia mallei (strain ATCC 23344) GN=rpsF PE=3 SV=1 gi\|167918592 - gi\|167918592\|ref\|ZP_02505683.1\| 30S ribosomal protein S6 [Burkholderia pseudomallei BCC215] gi\|254178587, gi... - gi\|254178587\|ref\|ZP_04885242.1\| 30S ribosomal protein S6 [Burkholderia mallei ATCC 10399], gi\|194314... gi\|167902328 - gi\|167902328\|ref\|ZP_02489533.1\| 30S ribosomal protein S6 [Burkholderia pseudomallei NCTC 13177] gi\|167910566 - gi\|167910566\|ref\|ZP_02497657.1\| 30S ribosomal protein S6 [Burkholderia pseudomallei 112] RS6_BURM9 - 30S ribosomal protein S6 OS=Burkholderia mallei (strain NCTC 10229) GN=rpsF PE=3 SV=1 gi\|217421378, gi... - gi\|217421378\|ref\|ZP_03452882.1\| 30S ribosomal protein S6 [Burkholderia pseudomallei 576], gi\|2173951... gi\|167719190 - gi\|167719190\|ref\|ZP_02402426.1\| 30S ribosomal protein S6 [Burkholderia pseudomallei DM98] gi\|167738192 - gi\|167738192\|ref\|ZP_02410966.1\| 30S ribosomal protein S6 [Burkholderia pseudomallei 14] gi\|134251526, gi... - gi\|134277876\|ref\|ZP_01764591.1\| 30S ribosomal protein S6 [Burkholderia pseudomallei 305], gi\|1342515... gi\|167581639 - gi\|167581639\|ref\|ZP_02374513.1\| 30S ribosomal protein S6 [Burkholderia thailandensis TXDOH] gi\|226197319, gi... - gi\|226197319\|ref\|ZP_03792896.1\| 30S ribosomal protein S6 [Burkholderia pseudomallei Pakistan 9], gi\|... gi\|167619759 - gi\|167619759\|ref\|ZP_02388390.1\| 30S ribosomal protein S6 [Burkholderia thailandensis Bt4] gi\|167845332 - gi\|167845332\|ref\|ZP_02470840.1\| 30S ribosomal protein S6 [Burkholderia pseudomallei B7210] gi\|167893874 - gi\|167893874\|ref\|ZP_02481276.1\| 30S ribosomal protein S6 [Burkholderia pseudomallei 7894] gi\|237503908, gi... - gi\|237812613\|ref\|YP_002897064.1\| ribosomal protein S6 [Burkholderia pseudomallei MSHR346], gi\|237503... gi\|167815381 - gi\|167815381\|ref\|ZP_02447061.1\| 30S ribosomal protein S6 [Burkholderia pseudomallei 91] gi\|167823789 - gi\|167823789\|ref\|ZP_02455260.1\| 30S ribosomal protein S6 [Burkholderia pseudomallei 9]	122.0	[0..2]	[106..4]
RS6_NITEU - 30S ribosomal protein S6 OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) GN=rpsF PE=3 SV=1 RS6_NITEU - 30S ribosomal protein S6 OS=Nitrosomonas europaea GN=rpsF PE=3 SV=1	122.0	[0..2]	[106..4]
RS6_METFK - 30S ribosomal protein S6 OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=rpsF ...	122.0	[0..2]	[106..4]
RS6_BURXL - 30S ribosomal protein S6 OS=Burkholderia xenovorans (strain LB400) GN=rpsF PE=3 SV=1 RS6_BURPP - 30S ribosomal protein S6 OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=rpsF PE=3 SV=1 gi\|170692292, gi... - gi\|170692292\|ref\|ZP_02883455.1\| ribosomal protein S6 [Burkholderia graminis C4D1M], gi\|170142722\|gb\|...	122.0	[0..2]	[106..4]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYELFCITRP AANATRTSSP TLAMNIAKNC GRAILDNKGV VVDVESMGLK ELAKPIKKLN  60
   61 QSYSFGHWWS MTFYSNPTVQ SEIQRILRLE PSVLRYMIVK KADKLSDLM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.0
Match:	1p6gF
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.72663177460478	bayes_pls_golite062009
structural molecule activity	9.15324307340032	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: