YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC3D6.06c
Organism:	Schizosaccharomyces pombe
Length:	341 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC3D6.06c.

Description	E-value	Query Range	Subject Range
gi\|195326413, gi... - gi\|195326413\|ref\|XP_002029923.1\| GM24850 [Drosophila sechellia], gi\|194118866\|gb\|EDW40909.1\| GM24850... CG6767-PB - This gene is referred to in FlyBase by the symbol Dmel\CG6767 (CG6767, FBgn0036030). It is a protein... gi\|194196314, gi... - gi\|195589123\|ref\|XP_002084305.1\| GD12902 [Drosophila simulans], gi\|194196314\|gb\|EDX09890.1\| GD12902 ... gi\|195490734, gi... - gi\|195490734\|ref\|XP_002093265.1\| GE21218 [Drosophila yakuba], gi\|194179366\|gb\|EDW92977.1\| GE21218 [D...	367.0	[0..1]	[338..48]
gi\|157104792, gi... - gi\|157104792\|ref\|XP_001648571.1\| ribose-phosphate pyrophosphokinase 1, putative [Aedes aegypti], gi\|...	367.0	[0..1]	[338..37]
gi\|110748682 - gi\|110748682\|ref\|XP_623843.2\| PREDICTED: similar to CG6767-PB, isoform B isoform 1 [Apis mellifera]	361.0	[0..1]	[338..29]
gi\|74006475 - gi\|74006475\|ref\|XP_856746.1\| PREDICTED: similar to Ribose-phosphate pyrophosphokinase II (Phosphorib...	360.0	[0..1]	[339..1]
gi\|33303737 - gi\|33303737\|gb\|AAQ02382.1\| phosphoribosyl pyrophosphate synthetase 1 [synthetic construct]	358.0	[0..1]	[340..1]
gi\|91078800 - gi\|91078800\|ref\|XP_967041.1\| PREDICTED: similar to CG6767-PB, isoform B isoform 1 [Tribolium castane...	358.0	[0..1]	[338..36]
gi\|224098594 - gi\|224098594\|ref\|XP_002187809.1\| PREDICTED: similar to phosphoribosyl pyrophosphate synthetase 1 iso... gi\|50745642 - gi\|50745642\|ref\|XP_420181.1\| PREDICTED: hypothetical protein [Gallus gallus] gi\|542151400\|ref... - PREDICTED: ribose-phosphate pyrophosphokinase 1 isoform X2 [Zonotrichia albicollis]	357.0	[0..1]	[339..1]
gi\|68372393, gi\|... - gi\|68372393\|ref\|XP_685452.1\| PREDICTED: similar to Ribose-phosphate pyrophosphokinase I -like isofor...	357.0	[0..1]	[339..1]

Back

Predicted Domain #1

Region A:
Residues: [1-341]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNLVVFGTE SHPKLTESIC EHLCLDIGRV ELSKFSNGET SVRIKQSVRG CDVYIVSPAS  60
   61 GQVNDHLMEL LIMISACKTA SAKKVTAVLP VFPYSRQPDQ KFSFSGAPLS DLQDAVVPCK 120
  121 KQTGYHPWIA QSGTLVADLL MCSGADHIIT MDLHDPQFQG FFDIPVDNLF GRPLLKHYIS 180
  181 LNIPNYHNAV IVSPDAGGAK RATAIADALG LDFALIHKNR RHEYGTSLML VGDVQNKVAI 240
  241 LIDDLIDTAY TLVRAAEFVK EHGASKIYAL VTHCVLSGDA IERVKLSCID KLIVTNTAPQ 300
  301 TITPSGCFDI IDVAPTFAEA IRRIHNGESI SILYDHNQVW V

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	97.69897
Match:	2h06A
Description:	No description for 2h06A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits