YRC Public Data Repository - Protein Structure Prediction

Protein:	rsc7
Organism:	Schizosaccharomyces pombe
Length:	390 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rsc7.

Description	E-value	Query Range	Subject Range
gi\|67527998, gi\|... - gi\|67527998\|ref\|XP_661843.1\| hypothetical protein AN4239.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	463.0	[0..2]	[367..100]
gi\|28923741, gi\|... - gi\|32414193\|ref\|XP_327576.1\| hypothetical protein [Neurospora crassa], gi\|28923741\|gb\|EAA32908.1\| hy... gi\|85068257 - gi\|85068257\|ref\|XP_962144.1\| hypothetical protein NCU07290 [Neurospora crassa OR74A]	447.0	[0..5]	[326..76]
gi\|39940932, gi\|... - gi\|39940932\|ref\|XP_360003.1\| hypothetical protein MG05378.4 [Magnaporthe grisea 70-15], gb\|EAA54586....	445.0	[0..7]	[324..66]
gi\|46108622, gi\|... - gi\|46108622\|ref\|XP_381369.1\| hypothetical protein FG01193.1 [Gibberella zeae PH-1], gi\|42544814\|gb\|E...	437.0	[0..11]	[326..85]
gi\|83766819 - gi\|83766819\|dbj\|BAE56959.1\| unnamed protein product [Aspergillus oryzae] gi\|169768982 - gi\|169768982\|ref\|XP_001818961.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|220692175, gi... - gi\|238501408\|ref\|XP_002381938.1\| nuclear localization protein NPL6, putative [Aspergillus flavus NRR...	434.0	[0..5]	[326..75]
gi\|114194555, gi... - gi\|115389308\|ref\|XP_001212159.1\| hypothetical protein ATEG_02981 [Aspergillus terreus NIH2624], gi\|1...	432.0	[0..2]	[326..79]
gi\|88180352, gi\|... - gi\|88180352\|gb\|EAQ87820.1\| hypothetical protein CHGG_04439 [Chaetomium globosum CBS 148.51], gi\|1161...	419.0	[0..9]	[336..78]
NPL6 - Component of the RSC chromatin remodeling complex; interacts with Rsc3p, Rsc30p, Ldb7p, and Htl1p to... RSC7_YEAST - Chromatin structure-remodeling complex subunit RSC7 OS=Saccharomyces cerevisiae (strain ATCC 204508 ...	415.0	[0..36]	[380..80]
gi\|68472878, gi\|... - gi\|68472878\|ref\|XP_719504.1\| hypothetical protein CaO19.2055 [Candida albicans SC5314], gi\|68472619\|... orf19.9602, orf1... - NPL6 CGDID:CAL0004441 Assembly 19, Contig19-10139 (116805, 115456) CDS, reverse complemented, transl...	412.0	[0..72]	[383..149]
gi\|45185188, gi\|... - gi\|45185188\|ref\|NP_982905.1\| ABL042Wp [Ashbya gossypii ATCC 10895], gi\|44980846\|gb\|AAS50729.1\| ABL04... gi\|44980846 - gi\|44980846\|gb\|AAS50729.1\| ABL042Wp [Ashbya gossypii ATCC 10895]	409.0	[0..14]	[380..119]

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Predicted Domain #1

Region A:
Residues: [1-66]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSTAGSDAS TPTNHTVSSK KRRGRPPKGS YAAYGSSDDD DEEYSGRTRR RNRNTRPRVS  60
   61 APSSSS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [67-222]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TVVPKDLYSH RATLEDDELN FGVVDPEGEK KVNELGYLNG GREYRCRTFT CLGRGNRLYM  60
   61 LSTEPARAMG YRDSYLLFLK HRSLHKIIVD DSEKWDLIER NIIPHSYKGR AVGIVAARSI 120
  121 FREFGARIIV GGRRIVDDYW EGEFRARGFV EGELAD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	77.657577
Match:	PF08624.1
Description:	No description for PF08624.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [223-390]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDDKLPPPGM PYNRNQYVAW HGASAVYHPQ PSLEAQLPAA ARKRKKEPPK DATWLFQHAK  60
   61 ATAAYNNDIT KYLVQKQDIG YFEPHTNLLH VPLNTQPTKT HWIQAKTGTE CPAPKLDILV 120
  121 ALNSDVAPQV SIANIPPSVY ASCPLHVQEA IRKRQEQEIR SIRLNSMY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits