YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC651.02
Organism:	Schizosaccharomyces pombe
Length:	276 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC651.02.

Description	E-value	Query Range	Subject Range
gi\|47214136 - gi\|47214136\|emb\|CAG01394.1\| unnamed protein product [Tetraodon nigroviridis]	270.0	[0..3]	[275..433]
gi\|60688591, gi\|... - gi\|60688591\|gb\|AAH91101.1\| Nit2-prov protein [Xenopus tropicalis], gi\|197246228\|gb\|AAI68796.1\| Nit2 ...	264.0	[0..3]	[275..4]
NIT2 - nitrilase family, member 2	263.0	[0..3]	[275..5]
gi\|109032725 - gi\|109032725\|ref\|XP_001091514.1\| PREDICTED: similar to nitrilase family, member 2 [Macaca mulatta]	260.0	[0..3]	[275..55]
NIT2_DANRE - Omega-amidase NIT2 OS=Danio rerio GN=nit2 PE=2 SV=1	260.0	[0..3]	[275..5]
NIT2_RAT - Omega-amidase NIT2 OS=Rattus norvegicus GN=Nit2 PE=1 SV=1	259.0	[0..3]	[275..5]
NIT2B_XENLA - Omega-amidase NIT2-B OS=Xenopus laevis GN=nit2b PE=2 SV=1	259.0	[0..3]	[275..5]

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Predicted Domain #1

Region A:
Residues: [1-276]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLAAVAQLN SSGSILKNLA ICKELISQAA AKGAKCIFFP EASDFIAHNS DEAIELTNHP  60
   61 DCSKFIRDVR ESATKHSIFV NICVHEPSKV KNKLLNSSLF IEPLHGEIIS RYSKAHLFDV 120
  121 EIKNGPTLKE SNTTLRGEAI LPPCKTPLGK VGSAICFDIR FPEQAIKLRN MGAHIITYPS 180
  181 AFTEKTGAAH WEVLLRARAL DSQCYVIAPA QGGKHNEKRA SYGHSMIVDP WGTVIAQYSD 240
  241 ISSPNGLIFA DLDLNLVDHV RTYIPLLRRN DLYPTI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	63.522879
Match:	1emsA
Description:	NIT-FHIT fusion protein, C-terminal domain; NIT-FHIT fusion protein, N-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits