YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC4B3.03c
Organism:	Schizosaccharomyces pombe
Length:	679 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC4B3.03c.

Description	E-value	Query Range	Subject Range
gi\|109485944, gi... - gi\|109486953\|ref\|XP_001056626.1\| PREDICTED: similar to cyclin M4 [Rattus norvegicus], gi\|109485944\|r...	382.0	[0..3]	[581..151]
gi\|76628705 - gi\|76628705\|ref\|XP_600662.2\| PREDICTED: similar to cyclin M4 [Bos taurus]	377.0	[0..5]	[581..138]
gi\|50511003 - gi\|50511003\|dbj\|BAD32487.1\| mKIAA1592 protein [Mus musculus]	376.0	[0..3]	[581..141]
CNNM4 - cyclin M4	374.0	[0..3]	[586..120]
gi\|89199894, gi\|... - gi\|89199894\|ref\|ZP_01178651.1\| CBS:Protein of unknown function DUF21:Transporter-associated region [...	371.0	[0..63]	[469..3]
gi\|218541522, gi... - gi\|218898446\|ref\|YP_002446857.1\| CBS domain protein [Bacillus cereus G9842], gi\|218541522\|gb\|ACK9391... gi\|74488468, gi\|... - gi\|75764043\|ref\|ZP_00743650.1\| Magnesium and cobalt efflux protein corC [Bacillus thuringiensis sero...	369.0	[0..63]	[463..3]
gi\|42782445, gi\|... - gi\|42782445\|ref\|NP_979692.1\| CBS domain-containing protein [Bacillus cereus ATCC 10987], gi\|42738370...	369.0	[0..63]	[463..3]
gi\|52142176, gi\|... - gi\|52142176\|ref\|YP_084653.1\| hypothetical protein BCZK3066 [Bacillus cereus E33L], gi\|51975645\|gb\|AA...	368.0	[0..63]	[463..3]

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Predicted Domain #1

Region A:
Residues: [1-180]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLRIRKAS LYGFSTVFIL LQSYAVAYPL RAFRQNDGIG IAMNPSQDGG FVSAEKDSDF  60
   61 EYWMKLIISA VLILLGGVFA GLTIGLMGCD DLHLQVLEQS GDASERVHAR KVLKLLRRGK 120
  121 HWVLVTLLLG NVIVNETLPI VFDSIIGGGW PAVLISTAMI VIFGEVIPQA TCVRYGLSIG 180
  181

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	8.677781
Match:	PF01595.11
Description:	No description for PF01595.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [181-474]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKLEPIVLFM MYLLWPIAYP TALILDACLG ESQSTMYKKS GLKTLVTLHR DLGIDKLNQD  60
   61 EVTIITAVLD LREKHAESIM TPIEDVFTLP MDRILDEDLI GEIICAGYSR IPVHKPGFPH 120
  121 DFIGMLLTKT LIGYDPDDKW PVGKFALATL PQTWPNTSCL DLLNYCQEGK SHMILISNSP 180
  181 GEPHGAIGVI TLEDIIEELI GEEIIDETDV YIDVHKGLPR VGENNDFWNR MLHRSHLSTM 240
  241 AALHKSQRSH DLAANEHAPI LNPKNSALNP RLVTNDRVKV KSPSLIQSST GYGS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.0
Match:	2cu0A
Description:	No description for 2cu0A was found.

Predicted Domain #3

Region A:
Residues: [475-679]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQSPSRSDL PSKISRVNAE LQAHGSQRSS IDVSKENKSS VADGPSSQAH NGPSTQPPEA  60
   61 LPNGTDPSSS KTTENNGNQQ SERTESADGK KDNSGSISSN SSKTFTGKRV RLGNVIESNV 120
  121 VSPDGTNRIV IEPFERSVDP NNADIVEMVE RNGIVVPKVT VTSHEDDVDS VHNTPMSVSS 180
  181 TLSVKTSSSK VPRNKRKRRK GKSKK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits