YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC29A3.05
Organism:	Schizosaccharomyces pombe
Length:	139 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC29A3.05.

Description	E-value	Query Range	Subject Range
gi\|122891090, gi... - gi\|62899050\|ref\|NP_001017401.1\| zinc finger, HIT domain containing 1 [Danio rerio], gi\|62531213\|gb\|A...	163.0	[0..11]	[138..8]
gi\|109066184 - gi\|109066184\|ref\|XP_001107895.1\| PREDICTED: zinc finger, HIT type 1 isoform 1 [Macaca mulatta]	156.0	[0..11]	[138..22]
gi\|73957813 - gi\|73957813\|ref\|XP_536855.2\| PREDICTED: similar to Zinc finger HIT domain containing protein 1 (Cycl... ZNHI1_BOVIN - Zinc finger HIT domain-containing protein 1 OS=Bos taurus GN=ZNHIT1 PE=2 SV=1 ENSCJAT00000031181 - null ZNHIT1 - zinc finger, HIT type 1 CCDS5716.1_1 - null gi\|114615130 - gi\|114615130\|ref\|XP_527843.2\| PREDICTED: zinc finger, HIT domain containing 1 [Pan troglodytes] gi\|109066182 - gi\|109066182\|ref\|XP_001107951.1\| PREDICTED: zinc finger, HIT type 1 isoform 2 [Macaca mulatta] gi\|123982920, gi... - gi\|123997601\|gb\|ABM86402.1\| zinc finger, HIT type 1 [synthetic construct], gi\|123982920\|gb\|ABM83201.... gi\|149755986 - gi\|149755986\|ref\|XP_001504511.1\| PREDICTED: similar to Zinc finger HIT domain-containing protein 1 (...	153.0	[0..10]	[138..7]
gi\|12848798, gi\|... - gi\|58037197\|ref\|NP_081594.1\| zinc finger, HIT domain containing 1 [Mus musculus], gi\|26348771\|dbj\|BA... tr\|D3ZNG9\|D3ZNG9_RAT - Uncharacterized protein OS=Rattus norvegicus GN=Znhit1	151.0	[0..11]	[138..7]
gi\|111305747, gi... - gi\|118403566\|ref\|NP_001017056.2\| zinc finger, HIT type 1 [Xenopus (Silurana) tropicalis], gi\|1113057...	146.0	[0..11]	[138..8]
gi\|34871702, gi\|... - ref\|XP_341052.1\| similar to zinc finger, HIT domain containing 1; putative cyclin G1 interacting pro...	143.0	[0..11]	[133..42]
gi\|32415479, gi\|... - gi\|32415479\|ref\|XP_328219.1\| predicted protein [Neurospora crassa], gi\|28918290\|gb\|EAA27967.1\| predi... gi\|85083850 - gi\|85083850\|ref\|XP_957203.1\| hypothetical protein NCU01780 [Neurospora crassa OR74A]	142.0	[0..1]	[132..1]

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Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFVTPIEHAV QKRKKQKQRS VVDPVTRERQ LKRNLADLEK DNFSDIRFEI PKDLLQRRVL  60
   61 PISVRRILSS RKTFVNYLDE TPNSRYNTCV AKPSYKPPRK FCNVCGYWGK YACQNCGTSY 120
  121 CSKGCEVIHS ETRCMKVYA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.291	d.111.1	PR-1-like
View	Download	0.284	d.32.1	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
View	Download	0.268	a.246.1	Description not found.
View	Download	0.260	a.41.1	Domain of poly(ADP-ribose) polymerase
View	Download	0.253	a.45.1	Glutathione S-transferase (GST), C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits