YRC Public Data Repository - Protein Structure Prediction

Protein:	pha2
Organism:	Schizosaccharomyces pombe
Length:	287 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pha2.

Description	E-value	Query Range	Subject Range
gi\|37525232, gi\|... - gi\|37525232\|ref\|NP_928576.1\| bifunctional chorismate mutase/prephenate dehydratase [Photorhabdus lum...	351.0	[0..4]	[283..103]
gi\|238729525, gi... - gi\|77976463\|ref\|ZP_00831951.1\| COG0077: Prephenate dehydratase [Yersinia intermedia ATCC 29909], gi\|...	349.0	[0..4]	[283..103]
gi\|162354353, gi... - gi\|77633065\|ref\|ZP_00795219.1\| COG0077: Prephenate dehydratase [Yersinia pestis Angola], gi\|16242153... gi\|152958934, gi... - gi\|77631815\|ref\|ZP_00794401.1\| COG0077: Prephenate dehydratase [Yersinia pseudotuberculosis IP 31758... Q66E50\|Q66E50_YERPS - Bifuctional: chorismate mutase and prephenate dehydratase - Yersinia pseudotuberculosis gi\|145600176, gi... - gi\|145600176\|ref\|YP_001164252.1\| bifunctional chorismate mutase/prephenate dehydratase [Yersinia pes... gi\|51595193, gi\|... - gi\|51595193\|ref\|YP_069384.1\| bifunctional chorismate mutase/prephenate dehydratase [Yersinia pseudot... gi\|45440256, gi\|... - gi\|45440256\|ref\|NP_991795.1\| bifunctional chorismate mutase/prephenate dehydratase [Yersinia pestis ... gi\|186697236, gi... - gi\|186894210\|ref\|YP_001871322.1\| bifunctional chorismate mutase/prephenate dehydratase [Yersinia pse... gi\|108774628, gi... - gi\|229901196\|ref\|ZP_04516319.1\| Chorismate mutase I / Prephenate dehydratase [Yersinia pestis Nepal5... gi\|229700459, gi... - gi\|229896385\|ref\|ZP_04511553.1\| Chorismate mutase I / Prephenate dehydratase [Yersinia pestis Pestoi...	346.0	[0..4]	[283..103]
gi\|238721179, gi... - gi\|77972191\|ref\|ZP_00827765.1\| COG0077: Prephenate dehydratase [Yersinia frederiksenii ATCC 33641], ...	345.0	[0..4]	[283..103]
PHEA_ENTAG - P-protein OS=Enterobacter agglomerans GN=pheA PE=3 SV=1	344.0	[0..3]	[283..103]
gi\|238785834, gi... - gi\|77956721\|ref\|ZP_00820803.1\| COG0077: Prephenate dehydratase [Yersinia bercovieri ATCC 43970], gi\|...	344.0	[0..4]	[283..103]
gi\|153840222, gi... - gi\|153840222\|ref\|ZP_01992889.1\| P-protein [Vibrio parahaemolyticus AQ3810], gi\|149746118\|gb\|EDM57248... gi\|28805538, gi\|... - gi\|28897329\|ref\|NP_796934.1\| chorismate mutase/prephenate dehydratase [Vibrio parahaemolyticus RIMD ... gi\|28805538 - gi\|28805538\|dbj\|BAC58818.1\| chorismate mutase/prephenate dehydratase [Vibrio parahaemolyticus RIMD 2...	343.0	[0..4]	[283..108]
gi\|110647721, gi... - gi\|110834610\|ref\|YP_693469.1\| P-protein, chorismate mutase/prephenate dehydratase [Alcanivorax borku...	343.0	[0..3]	[284..89]
gi\|49612798, gi\|... - gi\|50122272\|ref\|YP_051439.1\| bifunctional chorismate mutase/prephenate dehydratase [Pectobacterium a...	342.0	[0..4]	[283..103]
gi\|77960428, gi\|... - gi\|77960428\|ref\|ZP_00824299.1\| COG0077: Prephenate dehydratase [Yersinia mollaretii ATCC 43969], gi\|...	342.0	[0..4]	[283..103]

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Predicted Domain #1

Region A:
Residues: [1-287]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASKIAFLG PRGTFSHQAA LLARPDSLLC SLPSFAGKLI FALKFILICF LAVLEALSSR  60
   61 QVDYAVLPIE NSTNGAVIPA YDLLKGRDDI QAVGEVLVPA HHCIIGKSLE NVQKILSHPQ 120
  121 AFGQCSKWIS ANVPNAEFVS VSSTSQAAAL ASKDITGTIV AISSELCAVE NQFNLLVKNI 180
  181 EDDSNNRTRF LLLRSGGFQD DLSPLKEKSL LQFYLSHPKK LSAVFEVFAA HKVVITNLVV 240
  241 RPSCKFPWTY IYFVECLGME KHLIDRVGKY CDTFTFMGSY TNQISYF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	79.221849
Match:	2qmxA
Description:	No description for 2qmxA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits