YRC Public Data Repository - Protein Structure Prediction

Protein:	rpl36a
Organism:	Schizosaccharomyces pombe
Length:	106 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpl36a.

Description	E-value	Query Range	Subject Range
gi\|71000934, gi\|... - gi\|71000934\|ref\|XP_755148.1\| ribosomal protein L41 [Aspergillus fumigatus Af293], gi\|66852786\|gb\|EAL... gi\|159129244 - gi\|159129244\|gb\|EDP54358.1\| conserved hypothetical protein [Aspergillus fumigatus A1163]	178.0	[0..2]	[105..123]
gi\|74008235 - gi\|74008235\|ref\|XP_538108.2\| PREDICTED: similar to large subunit ribosomal protein L36a [Canis famil...	170.0	[0..1]	[106..112]
gi\|114689457 - gi\|114689457\|ref\|XP_521180.2\| PREDICTED: similar to ribosomal protein L36a [Pan troglodytes]	157.0	[0..1]	[106..37]
gi\|109072449 - gi\|109072449\|ref\|XP_001088777.1\| PREDICTED: similar to large subunit ribosomal protein L36a [Macaca ...	150.0	[0..1]	[106..40]
gi\|113418957 - gi\|113418957\|ref\|XP_001126741.1\| PREDICTED: similar to large subunit ribosomal protein L36a [Homo sa...	148.0	[0..1]	[106..62]
gi\|76627666 - gi\|76627666\|ref\|XP_869973.1\| PREDICTED: similar to large subunit ribosomal protein L36a isoform 1 [B...	144.0	[0..1]	[106..44]
gi\|38101994, gi\|... - gi\|39974615\|ref\|XP_368698.1\| hypothetical protein MG00546.4 [Magnaporthe grisea 70-15], gb\|EAA48888....	142.0	[0..1]	[106..1]

Back

Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNIPKTRKT YCPGKNCRKH TVHRVTQYKK GPDSKLAQGK RRYDRKQSGF GGQTKPVFHK  60
   61 KAKVTKKVVL RLECVSCKYK NQLVLKRCKH FELGGEKKTK GAAIQF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.522879
Match:	1s1iZ
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits