YRC Public Data Repository - Protein Structure Prediction

Protein:	hse1
Organism:	Schizosaccharomyces pombe
Length:	373 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for hse1.

Description	E-value	Query Range	Subject Range
STAM2_RAT - Signal transducing adapter molecule 2 OS=Rattus norvegicus GN=Stam2 PE=2 SV=1	214.0	[0..1]	[368..1]
gi\|74201485 - gi\|74201485\|dbj\|BAE26170.1\| unnamed protein product [Mus musculus]	213.0	[0..1]	[368..1]
HSE1_EMENI - Class E vacuolar protein-sorting machinery protein hse1 OS=Emericella nidulans (strain FGSC A4 / ATC... HSE1_EMENI - Class E vacuolar protein-sorting machinery protein hse1 OS=Emericella nidulans GN=hse1 PE=3 SV=1	212.0	[0..1]	[367..1]
gi\|116003909, gi... - gi\|116003909\|ref\|NP_001070310.1\| signal transducing adaptor molecule 1 [Bos taurus], gi\|115304893\|gb...	210.0	[0..1]	[368..1]
STAM - signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	209.0	[0..1]	[368..1]
HSE1_NEUCR - Class E vacuolar protein-sorting machinery protein hse-1 OS=Neurospora crassa GN=hse-1 PE=3 SV=1 HSE1_NEUCR - Class E vacuolar protein-sorting machinery protein hse1 OS=Neurospora crassa (strain ATCC 24698 / 74...	208.0	[0..1]	[368..1]
gi\|114629620 - gi\|114629620\|ref\|XP_001153098.1\| PREDICTED: signal transducing adaptor molecule 1 isoform 4 [Pan tro...	208.0	[0..1]	[368..1]

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Predicted Domain #1

Region A:
Residues: [1-76]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRGKPNSIE TLILQATDEK NTKEKWDVIM DACDQLSSTS GDVGRNSIKF LNKRLDTANA  60
   61 NIQLLALTLT DAIVKN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.69897
Match:	1x5bA
Description:	The solution structure of the VHS domain of human Signal transducing adaptor molecule 2
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [77-373]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CKTSIVREIS SRTFTDSLLK IASDSTTHNR VRSRIAVLVN EWAEIMKKDP NMSLMQDICE  60
   61 KIRKLDIVDL RAPKKPEKEA MNELELKREE EELQYALALS LSESTAQSNK VENPQSTKDE 120
  121 PLQKTNQRQE SNLATSPAST VSRVRALYDF AATEQGELSF KKGDIILVLE SVYKDWWKGS 180
  181 CKNAVGIFPV NYVQRVVEPT IEQQRQSAHM EQQVFDALPQ IDELLDTLST TSPDAADDDA 240
  241 LQGKYHAMIA LRPKLVRLIE KYASQKEELM DLNERLLVAR RDYEKLYEQS MSEMRNF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.69897
Match:	2dybA
Description:	No description for 2dybA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits