YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC6F6.09
Organism:	Schizosaccharomyces pombe
Length:	138 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC6F6.09.

Description	E-value	Query Range	Subject Range
gi\|109477213 - gi\|109477213\|ref\|XP_001057055.1\| PREDICTED: similar to Eaf6 CG12756-PA [Rattus norvegicus]	158.0	[0..14]	[126..39]
gi\|109002108 - gi\|109002108\|ref\|XP_001111537.1\| PREDICTED: similar to Eaf6 CG12756-PA isoform 1 [Macaca mulatta]	158.0	[0..13]	[126..7]
gi\|114555585 - gi\|114555585\|ref\|XP_001169097.1\| PREDICTED: hypothetical protein LOC456758 isoform 1 [Pan troglodyte...	157.0	[0..13]	[126..7]
gi\|12843811, gi\|... - gi\|21312536\|ref\|NP_081586.1\| hypothetical protein LOC70088 [Mus musculus], gi\|148698378\|gb\|EDL30325.... IPI:IPI00359017.... - Tax_Id=10116 PREDICTED: similar to sarcoma antigen NY-SAR-91, Uncharacterized protein OS=Rattus norv...	155.0	[0..14]	[126..8]
gi\|70888315 - gi\|70888315\|gb\|AAZ13760.1\| sarcoma antigen NY-SAR-91 [Homo sapiens]	155.0	[0..13]	[126..7]
EAF6_CHICK - Chromatin modification-related protein MEAF6 OS=Gallus gallus GN=MEAF6 PE=2 SV=1	151.0	[0..14]	[126..10]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTPNSTPSE PPVNVSYYEQ CKKELHEMIE KRQLLETSLI GLEDSIYRLE GSYLEKTSGT  60
   61 GNIIRGFEGL LKNNASNLRR RADYSESDRL FSLSSLSSPH TRSPAYDLDD STETSRRRKR 120
  121 KNESDSHEGR RRSSFREL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	41.468521
Match:	PF09340.1
Description:	No description for PF09340.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits