YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC2G5.04c
Organism:	Schizosaccharomyces pombe
Length:	333 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC2G5.04c.

Description	E-value	Query Range	Subject Range
ERGI3_DANRE - Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Danio rerio GN=ergic3 PE=2 SV=1	408.0	[0..7]	[315..4]
ERGI3_XENTR - Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Xenopus tropicalis GN=ergic3 PE=2 ...	397.0	[0..7]	[314..4]
ERGI3_XENLA - Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Xenopus laevis GN=ergic3 PE=2 SV=1	394.0	[0..6]	[314..3]
gi\|218194960, gi... - gi\|218194960\|gb\|EEC77387.1\| hypothetical protein OsI_16129 [Oryza sativa Indica Group], gi\|116309990... gi\|113564536, gi... - gi\|50924738\|ref\|XP_472721.1\| OSJNBa0006M15.17 [Oryza sativa (japonica cultivar-group)], gi\|38347102\|...	387.0	[0..5]	[317..3]
gi\|30693281, gi\|... - gi\|30693281\|ref\|NP_564467.2\| unknown protein [Arabidopsis thaliana], gi\|27808598\|gb\|AAO24579.1\| At1g...	386.0	[0..5]	[317..3]
gi\|109092202 - gi\|109092202\|ref\|XP_001098982.1\| PREDICTED: serologically defined breast cancer antigen 84 isoform 3...	385.0	[0..7]	[315..4]
ERGIC3 - ERGIC and golgi 3	385.0	[0..7]	[315..4]
ERGI3_PONPY - Endoplasmic reticulum-Golgi intermediate compartment protein 3 - Pongo pygmaeus (Orangutan) ERGI3_PONAB - Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Pongo abelii GN=ERGIC3 PE=2 SV=1	383.0	[0..7]	[315..4]

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Predicted Domain #1

Region A:
Residues: [1-196]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRSRVPANI RAFDAFPKFS KEYRRQSSSR GGFFTILLSV LIVVLVFSQC VQYIRGIREQ  60
   61 ELFIYDSVSE LMDLNIDITI AMPCSNLRID VVDRTKDLVL ATEALTLEEA FIKDMPTSST 120
  121 IYKNDRYAGL RWARTEKFRK KNNAEPGSGT ACRIYGQLVV NRVNGQLHIT APGWGYGRSN 180
  181 IPFHSLNFTH YIEELS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [197-333]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FGEYYPALVN ALDGHYGHAN DHPFAFQYYL SVLPTSYKSS FRSFETNQYS LTENSVVRQL  60
   61 GFGSLPPGIF IDYDLEPLAV RVVDKHPNVA STLLRILAIS GGLITVASWI ERVYSSRAHR 120
  121 STSEADMLGL LGKSETE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.913	N/A	N/A	d.83.2	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits