YRC Public Data Repository - Protein Structure Prediction

Protein:	ssu72
Organism:	Schizosaccharomyces pombe
Length:	197 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ssu72.

Description	E-value	Query Range	Subject Range
SSU72_MOUSE - RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Mus musculus GN=Ssu72 PE=1 SV=1	359.0	[0..3]	[197..2]
SSU72_CHICK - RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Gallus gallus GN=SSU72 PE=2 SV=1	359.0	[0..3]	[197..2]
SSU72_BOVIN - RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Bos taurus GN=SSU72 PE=2 SV=1	358.0	[0..3]	[197..2]
SSU72_RAT - RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Rattus norvegicus GN=Ssu72 PE=2 S...	358.0	[0..3]	[197..2]
gi\|57086817 - gi\|57086817\|ref\|XP_536707.1\| PREDICTED: similar to Ssu72 RNA polymerase II CTD phosphatase homolog i...	358.0	[0..3]	[197..2]
CCDS32.1_1 - null SSU72 - SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) gi\|108995563 - gi\|108995563\|ref\|XP_001094964.1\| PREDICTED: similar to Ssu72 RNA polymerase II CTD phosphatase homol... ENSCJAT00000021369 - null gi\|123990476, gi... - gi\|123999318\|gb\|ABM87235.1\| SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) [synthet... gi\|114550590, gi... - gi\|114550590\|ref\|XP_001147261.1\| PREDICTED: Ssu72 RNA polymerase II CTD phosphatase homolog isoform ...	357.0	[0..3]	[197..2]
SSU72_DANRE - RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Danio rerio GN=ssu72 PE=2 SV=1	352.0	[0..3]	[197..2]

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Predicted Domain #1

Region A:
Residues: [1-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPKTNLQIS VICASNQNRS MEAHNVLKNA GYQVDSFGTG SAVRLPGPSI DKPNIYQFGY  60
   61 PYDEIYKELE AQDSRLYTAN GLLKMLDRNR RIKRAPCRWQ DQDSIYNIVI TCEERCYDAI 120
  121 CEDLYRRGET LNRPVYLINV DIKDNHEEAS VGGKAILDLV NKLTEAQDKL EELFPSIMAD 180
  181 FQSNHPKLPV LYTIHFF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.36
Match:	2fekA
Description:	No description for 2fekA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits