YRC Public Data Repository - Protein Structure Prediction

Protein:	duo1
Organism:	Schizosaccharomyces pombe
Length:	166 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for duo1.

Description	E-value	Query Range	Subject Range
gi\|109123809 - gi\|109123809\|ref\|XP_001113811.1\| PREDICTED: similar to epidermal growth factor receptor pathway subs...	118.0	[0..3]	[143..489]
gi\|76621154 - gi\|76621154\|ref\|XP_876634.1\| PREDICTED: similar to epidermal growth factor receptor pathway substrat...	117.0	[0..3]	[143..384]
gi\|114576426 - gi\|114576426\|ref\|XP_001144557.1\| PREDICTED: intersectin 2 isoform 1 [Pan troglodytes]	117.0	[0..7]	[165..587]
EPS15L1 - epidermal growth factor receptor pathway substrate 15-like 1	116.0	[0..3]	[143..384]

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Predicted Domain #1

Region A:
Residues: [1-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSELQQELQ ILRSFNYTIE KLTDGLSASK EKIKSFETSI NNSNRLIQLW SSVLSQTEHT  60
   61 QNLILNSDWK GLSFDNEELE RLQHQKMLQI QAEEQRKIEL QQEQERLEQE RRQKEEAIAL 120
  121 QKQQQQRLLR SKDPKVRPAR RAASSYVPSR PSHVPKVFIH ECAFSG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.32
Match:	1jchA
Description:	Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits