YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC577.15c
Organism:	Schizosaccharomyces pombe
Length:	396 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC577.15c.

Description	E-value	Query Range	Subject Range
gi\|49092446, gi\|... - gi\|67526179\|ref\|XP_661151.1\| hypothetical protein AN3547.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	177.0	[0..9]	[394..813]
gi\|115374809, gi... - gi\|115374809\|ref\|ZP_01462084.1\| tetratricopeptide repeat family [Stigmatella aurantiaca DW4/3-1], gi...	163.0	[0..6]	[340..165]
gi\|61372503, gi\|... - gi\|61372509\|gb\|AAX43856.1\| nuclear autoantigenic sperm protein [synthetic construct], gi\|61372503\|gb...	160.0	[0..10]	[395..22]
gi\|30582353, gi\|... - gi\|56206152\|emb\|CAI22461.1\| nuclear autoantigenic sperm protein (histone-binding) [Homo sapiens], gi... gi\|60655377, gi\|... - gi\|60655379\|gb\|AAX32253.1\| nuclear autoantigenic sperm protein [synthetic construct], gi\|60655377\|gb...	160.0	[0..10]	[395..22]
gi\|114556276, gi... - gi\|114556278\|ref\|XP_001158676.1\| PREDICTED: similar to Nuclear autoantigenic sperm protein (histone-...	160.0	[0..10]	[395..22]
gi\|72396054, gi\|... - gi\|73668892\|ref\|YP_304907.1\| hypothetical protein Mbar_A1366 [Methanosarcina barkeri str. Fusaro], g...	159.0	[0..29]	[329..508]
gi\|50748750 - gi\|50748750\|ref\|XP_421389.1\| PREDICTED: similar to kinesin light chain 1J; KLC1J [Gallus gallus]	158.0	[0..1]	[338..223]
gi\|32452933 - gi\|32452933\|tpg\|DAA01276.1\| TPA: TPA_exp: kinesin light chain 1T [Mus musculus]	157.0	[0..9]	[329..55]
gi\|116195872, gi... - gi\|88180447\|gb\|EAQ87915.1\| hypothetical protein CHGG_04534 [Chaetomium globosum CBS 148.51], gi\|1161...	157.0	[0..8]	[394..759]

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Predicted Domain #1

Region A:
Residues: [1-396]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSDTKTLEN SKGNSATDAD TKNPSSSDSR AIEQLVTQGN MAYAQKNYEE AVDKYGQALM  60
   61 QSESIHGSES LENRNVLWLY GKSLFQIAIE NSQVLGNALG AKESVSQATE SFEEPEAIGS 120
  121 FTFSGQKIEN KYTVNEENSS IAHPEKESEE KETNEASPAS EEDEDDFNVA WEVLDLTRVM 180
  181 QSKAVDAYPD SKDEKIRLAD IYDLLGELSL EIENFSQASQ DLKTALEWKE KVYNVSNNTL 240
  241 LSEAHYKLAL ALEFTNPEDP SNKSRACEHV EKAAEILKNV LNERENEVTD KKGKGKQKAE 300
  301 ESTLTSDLEN LREMLSELEQ KTLDLKHGAP SLEEAVMSKM HESSLLSKDS SSLAQAVAEA 360
  361 VKNANDLGGL VKRKRTKQEV TSSSQKEGPK DKKKKD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.154902
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits