YRC Public Data Repository - Protein Structure Prediction

Protein:	dnt1
Organism:	Schizosaccharomyces pombe
Length:	599 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dnt1.

Description	E-value	Query Range	Subject Range
gi\|70878483 - gi\|70878483\|gb\|EAN91735.1\| trans-sialidase, putative [Trypanosoma cruzi] gi\|71649745 - gi\|71649745\|ref\|XP_813586.1\| trans-sialidase [Trypanosoma cruzi strain CL Brener]	241.0	[0..5]	[598..758]
SLAP1_CLOTH - Cell surface glycoprotein 1 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 ...	222.0	[0..6]	[598..1408]
SLP1_CLOTM, SLAP... - (Q06852) Cell surface glycoprotein 1 precursor (Outer layer protein B) (S-layer protein 1), Cell sur...	217.0	[0..18]	[598..771]
gi\|37930527, gi\|... - gi\|37930527\|gb\|AAP74661.1\| elicitor-like transglutaminase M81 [Phytophthora infestans], gi\|23505399\|...	209.0	[0..3]	[599..910]
gi\|88188037, gi\|... - gi\|88602575\|ref\|YP_502753.1\| mucin 2, intestinal/tracheal [Methanospirillum hungatei JF-1], gi\|88188...	203.0	[0..6]	[598..1522]
gi\|39579415, gi\|... - gi\|39579415\|emb\|CAE56721.1\| Hypothetical protein CBG24508 [Caenorhabditis briggsae], gi\|187040086\|em...	193.0	[0..39]	[592..2]
gi\|437310 - gi\|437310\|gb\|AAA62850.1\| nodulin	186.0	[0..85]	[597..25]

Back

Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTTLRLHII KDGEQDNQFM ILFDPSSSIS LLKEKVQETY KSLYPFESNI NIRNIKNEES  60
   61 YDIPNEYLVG EIFPTNSKVI VESFSSPLKK LDGTMINFKE KNIQHDLDGV ENDFATVQSA 120
  121 SNGVHAI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [128-390]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGKRTHPDES ENPRKLPKKN FVEAIDANSP GFVYRPTSIR DRAYSISSNH DNESTLTEGI  60
   61 ALKEIESPDK DRKADGIVNL SVTQEEDDNH QSFNSSLTPS QPTTYNRANF FSINDASSDS 120
  121 SSDAPLRTLS SPSRLRMKDN DRKYLVEHSP AALIKESETI DGIDDKSLRS STREVSVESP 180
  181 NEDSVNDDSS SDVSDEKETE AKHEIRAPAI IVRETSSHPS TAVPSENDTT ESENDTLSES 240
  241 STTSISSSPS ENSDTSDDLT KVD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [391-599]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPNKSLVNDN VSAKHDKESE NGKSKFPPPS QTLVTTSTIS AAGNEPSDEI GSENDSDSDS  60
   61 DSDSSVPLSQ LQKKSQQRNS VSHEIQNRGT KGSPKEPKAK PSTERPETHR TLSYSRLSEL 120
  121 SKTFSPEIRE PSLTKKTAVS MQESKEEGRS DESSESEESG SSSDESDNSE KEDRSNPIPV 180
  181 EKRASTVLNT KKKRKAKRNS ALAGLAALV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits