YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC2C4.04c
Organism:	Schizosaccharomyces pombe
Length:	125 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC2C4.04c.

Description	E-value	Query Range	Subject Range
gi\|44982891 - gi\|44982891\|gb\|AAS52121.1\| ADR201Wp [Ashbya gossypii ATCC 10895] gi\|45188074, gi\|... - gi\|45188074\|ref\|NP_984297.1\| ADR201Wp [Ashbya gossypii ATCC 10895], gi\|44982891\|gb\|AAS52121.1\| ADR20...	192.0	[0..4]	[125..22]
gi\|430986 - gi\|430986\|gb\|AAA79999.1\| unknown	186.0	[0..1]	[124..16]
gi\|49525757, gi\|... - gi\|50288041\|ref\|XP_446449.1\| unnamed protein product [Candida glabrata], gi\|49525757\|emb\|CAG59376.1\|... gi\|49525757 - gi\|49525757\|emb\|CAG59376.1\| unnamed protein product [Candida glabrata]	184.0	[0..1]	[124..19]
gi\|71019873, gi\|... - gi\|71019873\|ref\|XP_760167.1\| hypothetical protein UM04020.1 [Ustilago maydis 521], ref\|XP_401635.1\| ...	180.0	[0..1]	[124..39]
gi\|68482132, gi\|... - gi\|68482132\|ref\|XP_714950.1\| hypothetical protein CaO19.11012 [Candida albicans SC5314], gi\|46436551... orf19.11012 - orf19.3528 CGDID:CAL0005853 Assembly 19, Contig19-20183 (12010, 11582) CDS, reverse complemented, tr...	179.0	[0..2]	[124..14]
gi\|49644953 - gi\|49644953\|emb\|CAG98525.1\| KLLA0F16401p [Kluyveromyces lactis] gi\|50311583, gi\|... - gi\|50311583\|ref\|XP_455817.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644953\|emb\|CAG9852...	173.0	[0..1]	[125..20]
CB076_MOUSE - UPF0538 protein C2orf76 homolog OS=Mus musculus PE=1 SV=2	170.0	[0..3]	[124..5]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGATLTVRV IRNFEYRTLK NVVFHDIDLA TTTVDQFKKI IDERIQTDPS LKIYRTTHFD  60
   61 TLKIYVKAQQ HKTQNLAINL DHDDWILNDG AKTLSLCGIE NETELSYFEL AAYKAYQANP 120
  121 VQKWL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.834	d.15.6	Superantigen toxins, C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits